Tableau information
Concept source: d4d8sa_ amino acid (a.a.) range (GLY408)(GLY429)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY408) (PRO412) E1
(PRO412) (GLY414) H2
(PRO420) (GLY429) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -69.7° H2
E3 144.3° 100.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1y9kb_ : (GLY115) (GLU150) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Bacillus cereus [TaxId: 226900]
d1umxm_ : (ASN28) (SER54) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1um1a_ : (GLY37) (GLU63) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Hypothetical protein KIAA1849 |Human (Homo sapiens) [TaxId: 9606]
d2k2ca1 : (GLY26) (ASN64) [view usage] : g.89.1.1 |CHY zinc finger-like |CHY zinc finger-like |CHY zinc finger |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1es3a_ : (ALA55) (THR84) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d3hn6b_ : (ILE159) (THR187) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Borrelia burgdorferi [TaxId: 224326]
d4gdka_ : (GLU98) (LYS135) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ht5a_ : (TYR406) (GLY429) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d2a22b_ : (ASN61) (VAL90) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Cryptosporidium parvum [TaxId: 5807]
d1es2a_ : (ALA55) (THR84) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d2gbca1 : (VAL191) (SER215) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1seza2 : (GLY354) (PHE373) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |Protoporphyrinogen oxidase |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d3g7fm_ : (LYS31) (ALA53) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Blastochloris viridis [TaxId: 1079]
d2pe6b_ : (SER61) (GLN92) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |SUMO-1 (smt3 homologue) |Human (Homo sapiens) [TaxId: 9606]
d1eysm_ : (ARG32) (LEU54) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Thermochromatium tepidum [TaxId: 1050]
d2k1fa_ : (ARG54) (GLN84) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |SUMO-1 (smt3 homologue) |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4elya_ : (ASN413) (GLU452) [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |Shigella flexneri [TaxId: 623]
d2gnum_ : (GLY31) (GLY53) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Rhodobacter sphaeroides [TaxId: 1063]
d1mg8a_ : (LEU43) (ARG74) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of parkin |Mouse (Mus musculus) [TaxId: 10090]
d1yfka_ : (VAL121) (LEU156) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3t6dm_ : (LYS31) (ALA53) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Blastochloris viridis [TaxId: 1079]
d1ffya2 : (HIS201) (THR232) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Staphylococcus aureus [TaxId: 1280]
d1esia_ : (ALA55) (THR84) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d2eb6a_ : (GLY54) (ASP85) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1reua_ : (PRO18) (GLU46) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |Bone morphogenetic protein-2 (BMP-2) |Human (Homo sapiens) [TaxId: 9606]
d1fx0a3 : (GLN97) (LEU129) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of alpha subunit of F1 ATP synthase |Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
d2yrba1 : (GLY603) (ALA636) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Fantom |Human (Homo sapiens) [TaxId: 9606]
d1jyea_ : (ILE289) (ARG326) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
d3vh3b_ : (LYS74) (GLY111) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1rmga_ : (GLY110) (ASP134) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Rhamnogalacturonase A |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1skfa_ : (ALA55) (THR84) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d2ipab_ : (HIS42) (ILE66) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |automated matches |Bacillus subtilis [TaxId: 1423]
d3saob_ : (GLY10) (GLY42) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1y9kd_ : (GLY115) (GLU150) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Bacillus cereus [TaxId: 226900]
d3dtsm_ : (GLY31) (SER54) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d2qgxc_ : (ASP38) (LYS75) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zkha1 : (LYS51) (LEU82) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Splicing factor 3 subunit 1, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4e0fa1 : (PHE63) (SER91) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Brucella abortus [TaxId: 235]
d1y9ka1 : (GLY115) (GLU150) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |IAA acetyltransferase |Bacillus cereus [TaxId: 1396]
d1wpwa_ : (ASN93) (GLU117) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Sulfolobus tokodaii [TaxId: 111955]
d1jgwm_ : (GLY31) (SER54) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d1qcnb2 : (GLY622) (ARG662) [view usage] : d.177.1.1 |FAH |FAH |FAH |Fumarylacetoacetate hydrolase, FAH, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1tisa_ : (GLN138) (VAL164) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Bacteriophage T4 [TaxId: 10665]
d4rk5a_ : (VAL292) (ARG330) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Lactobacillus casei [TaxId: 321967]
d3dtrm_ : (GLY31) (SER54) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
d2arva_ : (LYS14) (GLU43) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |Activin A (Inhibin beta A) |Human (Homo sapiens) [TaxId: 9606]
d1es5a_ : (ALA55) (THR84) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d1ulta_ : (VAL333) (ALA369) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.70, e.3, d.159, d.117, c.77, c.124, c.93, c.37, b.60, f.26, c.60, e.23, e.11, d.108, d.20, d.177, d.15, b.7,
b.43, d.16, b.51, c.44, g.17, b.36, g.89