Tableau information
Concept source: d1obka_ amino acid (a.a.) range (ILE57)(THR108)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE57) (ASP63) E1
(ALA88) (GLY98) H2
(GLY98) (THR108) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -168.7° H2
E3 -31.7° 149.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1utea_ : (PRO5) (GLY51) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Mammalian purple acid phosphatase |Pig (Sus scrofa) [TaxId: 9823]
d3l18a_ : (MET1) (PHE35) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Thermococcus onnurineus [TaxId: 523850]
d1vl5a_ : (VAL112) (ASP145) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein BH2331 |Bacillus halodurans [TaxId: 86665]
d1j24a_ : (VAL5) (THR33) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |Putative ATP-dependent RNA helicase Hef, nuclease domain |Pyrococcus furiosus [TaxId: 2261]
d1m9na1 : (GLN6) (SER35) [view usage] : c.24.1.3 |Methylglyoxal synthase-like |Methylglyoxal synthase-like |Inosicase |IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d2vk9a1 : (LYS98) (ASP134) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Alpha-toxin |Clostridium novyi [TaxId: 1542]
d2ghia_ : (LYS175) (ILE210) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Plasmodium yoelii [TaxId: 352914]
d1o9oa_ : (ARG223) (GLU264) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
d2hoza_ : (GLY1208) (ASP1245) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Synechococcus elongatus [TaxId: 269084]
d1bq7a_ : (GLN21) (HIS60) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |Disulfide-bond formation facilitator (DsbA) |Escherichia coli [TaxId: 562]
d1sska_ : (TYR87) (THR113) [view usage] : b.148.1.1 |Coronavirus RNA-binding domain |Coronavirus RNA-binding domain |Coronavirus RNA-binding domain |Nucleocapsid protein |SARS coronavirus, (SARS-CoV) [TaxId: 227859]
d1rp5a2 : (GLU695) (GLY722) [view usage] : d.11.1.1 |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Penicillin-binding protein 2x (pbp-2x), c-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1l1ea_ : (ILE169) (SER207) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |PccA |Mycobacterium tuberculosis [TaxId: 1773]
d2m71a_ : (VAL5) (GLY47) [view usage] : d.68.1.0 |IF3-like |Translation initiation factor IF3, C-terminal domain |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
d3mbia1 : (GLY0) (PRO27) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d1g2ia_ : (MSE1) (PHE35) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |Intracellular protease |Pyrococcus horikoshii [TaxId: 53953]
d1jdwa_ : (ARG263) (LYS297) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d1frva_ : (VAL69) (GLY110) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |Nickel-iron hydrogenase, small subunit |Desulfovibrio gigas [TaxId: 879]
d3hoja_ : (ASN44) (GLU85) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |automated matches |Artificial gene [TaxId: 32630]
d2vkdb_ : (LEU98) (ASP132) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |automated matches |Clostridium sordellii [TaxId: 1505]
d1mhsa_ : (ASP646) (ALA668) [view usage] : i.18.1.1 |Membrane ion ATPase |Membrane ion ATPase |Membrane ion ATPase |Proton ATPase |Fungus (Neurospora crassa) [TaxId: 5141]
d2bvla1 : (ASN90) (PHE130) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Toxin B |Clostridium difficile [TaxId: 1496]
d4c2la_ : (ALA35) (PRO69) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus tubingensis [TaxId: 5068]
d1ttha2 : (LYS42) (GLY72) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d3pfka_ : (LYS2) (TYR38) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |ATP-dependent phosphofructokinase |Bacillus stearothermophilus [TaxId: 1422]
d1bs2a2 : (LYS143) (GLY190) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Arginyl-tRNA synthetase (ArgRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jlra_ : (LYS104) (ASP138) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Toxoplasma gondii [TaxId: 5811]
d2uwfa_ : (GLY258) (TRP317) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus halodurans [TaxId: 86665]
d3srza_ : (LEU97) (ASP131) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3pkza_ : (GLY56) (THR91) [view usage] : c.53.1.0 |Resolvase-like |Resolvase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1i2ka_ : (PRO127) (ASP166) [view usage] : e.17.1.1 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |Aminodeoxychorismate lyase |Escherichia coli [TaxId: 562]
d2pv7a2 : (GLN213) (THR243) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Prephenate dehydrogenase TyrA |Haemophilus influenzae [TaxId: 727]
d1fqva2 : (GLN150) (ARG179) [view usage] : c.10.1.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |Cyclin A/CDK2-associated p19, Skp2 |Cyclin A/CDK2-associated p19, Skp2 |Human (Homo sapiens) [TaxId: 9606]
d1o9na_ : (ARG223) (GLU264) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
d1obia_ : (ARG223) (GLU264) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
d2plaa1 : (LYS7) (TRP41) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rdwb_ : (ASP3) (TYR34) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1np7a2 : (THR7) (PRO42) [view usage] : c.28.1.1 |Cryptochrome/photolyase, N-terminal domain |Cryptochrome/photolyase, N-terminal domain |Cryptochrome/photolyase, N-terminal domain |Cryptochrome |Synechocystis sp. PCC 6803 [TaxId: 1148]
d4jiqa_ : (GLU54) (ILE98) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d4lfkb_ : (MET1) (GLU32) [view usage] : c.121.1.0 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |automated matches |automated matches |Lactobacillus rhamnosus [TaxId: 568704]
d1vs6j1 : (VAL11) (ASN58) [view usage] : c.21.1.1 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Escherichia coli [TaxId: 562]
d2vkdc_ : (LYS96) (ASP132) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d2bq8x_ : (ARG6) (GLY49) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q7sb_ : (ASP191) (ASN224) [view usage] : c.56.5.9 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |FGase-like |N-formylglutamate amidohydrolase |Ralstonia eutropha [TaxId: 106590]
d1nn4a_ : (LYS2) (LYS33) [view usage] : c.121.1.1 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |Alternate ribose 5-phosphate isomerase B, RpiB |Escherichia coli [TaxId: 562]
d1bhea_ : (THR16) (SER45) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |Polygalacturonase |Erwinia carotovora, subsp. carotovora [TaxId: 554]
d2bgwa2 : (ARG18) (LYS46) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d3h0uc_ : (THR21) (SER63) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Streptomyces avermitilis [TaxId: 33903]
d1cwua_ : (LYS19) (TRP52) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Oil seed rape (Brassica napus) [TaxId: 3708]
d1vhya1 : (PRO4) (GLY45) [view usage] : b.122.1.2 |PUA domain-like |PUA domain-like |YggJ N-terminal domain-like |Hypothetical protein HI0303 |Haemophilus influenzae [TaxId: 727]
d1obla_ : (ARG223) (GLU264) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
d1h0ha2 : (GLY122) (GLN154) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Tungsten containing formate dehydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1nn4b_ : (LYS2) (LYS33) [view usage] : c.121.1.1 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |Alternate ribose 5-phosphate isomerase B, RpiB |Escherichia coli [TaxId: 562]
d2astb2 : (GLN2138) (ARG2167) [view usage] : c.10.1.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |Cyclin A/CDK2-associated p19, Skp2 |Cyclin A/CDK2-associated p19, Skp2 |Human (Homo sapiens) [TaxId: 9606]
d2yswa_ : (ILE3) (ARG30) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2zl3a_ : (ARG29) (ILE65) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Helicobacter pylori [TaxId: 210]
d1j22a_ : (VAL5) (THR33) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |Putative ATP-dependent RNA helicase Hef, nuclease domain |Pyrococcus furiosus [TaxId: 2261]
d3l18b_ : (MET1) (PHE35) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Thermococcus onnurineus [TaxId: 523850]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.10, c.67, c.81, d.68, c.2, d.159, c.68, c.26, c.56, c.117, c.66, c.14, c.23, c.37, c.47, c.89, e.17, b.122,
d.126, c.78, c.53, c.28, c.121, c.61, c.24, c.52, e.19, d.11, b.148, c.21, i.18