Tableau information
Concept source: d1mjjb1 amino acid (a.a.) range (TYR56)(ASP72)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR56) (ASN60) E1
(ASN60) (LYS66) H2
(LYS66) (ASP72) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 108.0° H2
E3 153.8° -80.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4iyme_ : (ASP351) (ASP370) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2g5ca2 : (VAL144) (THR173) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Prephenate dehydrogenase TyrA |Aquifex aeolicus [TaxId: 63363]
d4iymo_ : (ASP351) (ASP370) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1kcwa4 : (GLY674) (ARG700) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d1cg1a_ : (THR356) (SER379) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1k1xa3 : (LYS246) (GLY263) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d1zmya1 : (ILE57) (SER71) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Camel (Camelus dromedarius) [TaxId: 9838]
d3fq1a_ : (GLU106) (LEU127) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d1t0fa1 : (PHE240) (GLN261) [view usage] : a.4.5.27 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |TnsA endonuclease, C-terminal domain |TnsA endonuclease, C-terminal domain |Escherichia coli [TaxId: 562]
d2j5wa5 : (GLY1015) (GLN1039) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4l1la_ : (MET256) (GLY273) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |C2 domain from protein kinase c (alpha) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1auya_ : (TRP75) (TRP95) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |TYMV (Turnip yellow mosaic virus) [TaxId: 12154]
d1n68a1 : (ALA136) (ASP165) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1i9ba_ : (CYS136) (PRO154) [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Acetylcholine binding protein (ACHBP) |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
d2yaaa_ : (GLY213) (GLU238) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1tzqa_ : (ASN115) (ASP146) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d1iaza_ : (ASN115) (ASP146) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
d1kcwa6 : (GLY1015) (LEU1038) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d1lopa_ : (THR82) (VAL102) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d1wqjb1 : (GLY56) (GLU81) [view usage] : g.3.9.1 |Knottins (small inhibitors, toxins, lectins) |Growth factor receptor domain |Growth factor receptor domain |Insulin-like growth factor-binding protein 4 |Human (Homo sapiens) [TaxId: 9606]
d1ov8a_ : (GLY116) (PRO140) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Auracyanin |Chloroflexus aurantiacus [TaxId: 1108]
d2cwwb2 : (GLU354) (LEU382) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d1a39a_ : (HIS38) (ILE78) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d1nbua_ : (ARG4) (TRP36) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Mycobacterium tuberculosis [TaxId: 1773]
d4lh7a_ : (GLY287) (PHE316) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1zwsa_ : (GLY213) (GLU238) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nmba_ : (LYS86) (GLY119) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Numb |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2z4fa_ : (ASP45) (HIS92) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kcwa2 : (GLY313) (GLN336) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d1wxwb2 : (GLU354) (LEU382) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d3v3rb_ : (SER155) (PRO178) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1kv7a1 : (ALA136) (ASP165) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1xsia1 : (ASN666) (ASN692) [view usage] : b.150.1.1 |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Escherichia coli [TaxId: 562]
d2avfb1 : (GLY130) (LEU157) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d3od3a3 : (ALA495) (VAL516) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1zm8a_ : (SER199) (ASN227) [view usage] : d.4.1.2 |His-Me finger endonucleases |His-Me finger endonucleases |DNA/RNA non-specific endonuclease |Nuclease NucA |Nostoc sp. PCC 7120 [TaxId: 103690]
d1fuxb_ : (HIS63) (ARG96) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbcL |Escherichia coli [TaxId: 562]
d2dn5a_ : (ALA43) (ILE80) [view usage] : d.288.1.0 |GTF2I-like repeat |GTF2I-like repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4l8sb1 : (SER87) (GLU115) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kcgh_ : (ILE86) (LEU108) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor IXa, protease domain |Human (Homo sapiens) [TaxId: 9606]
d2hmfa1 : (GLU146) (ASP161) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Methanococcus jannaschii [TaxId: 2190]
d1fuxa_ : (HIS63) (ARG96) [view usage] : b.17.1.2 |PEBP-like |PEBP-like |Prokaryotic PEBP-like proteins |Hypothetical protein YbcL |Escherichia coli [TaxId: 562]
d1kcwa1 : (ARG96) (THR143) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d1sqlc_ : (LEU4) (TRP35) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3t1ua_ : (THR82) (VAL102) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Azotobacter vinelandii [TaxId: 322710]
d1j2aa_ : (THR87) (VAL107) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d1sqlp_ : (LEU4) (TRP35) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2nula_ : (THR82) (VAL102) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d1ddlc_ : (LYS72) (TRP95) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
d2pk8a_ : (GLY71) (LYS92) [view usage] : d.274.1.1 |Hypothetical protein PF0899 |Hypothetical protein PF0899 |Hypothetical protein PF0899 |Hypothetical protein PF0899 |Pyrococcus furiosus [TaxId: 2261]
d1dyma_ : (HIS38) (ILE78) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d1e88a1 : (LEU80) (THR98) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Fibronectin |Human (Homo sapiens) [TaxId: 9606]
d1taea_ : (GLY287) (LYS315) [view usage] : d.142.2.2 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |Adenylation domain of NAD+-dependent DNA ligase |Adenylation domain of NAD+-dependent DNA ligase |Enterococcus faecalis [TaxId: 1351]
d1urxa_ : (THR37) (SER68) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |beta-Agarase A |Zobellia galactanivorans [TaxId: 63186]
d2g5cb2 : (GLY145) (THR173) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Prephenate dehydrogenase TyrA |Aquifex aeolicus [TaxId: 63363]
d1hu9a2 : (SER147) (ALA163) [view usage] : b.12.1.1 |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipase/lipooxygenase domain (PLAT/LH2 domain) |Lipoxigenase N-terminal domain |Plant lipoxigenase |Soybean (Glycine max), isozyme L3 [TaxId: 3847]
d1f1za1 : (PHE240) (GLN261) [view usage] : a.4.5.27 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |TnsA endonuclease, C-terminal domain |TnsA endonuclease, C-terminal domain |Escherichia coli [TaxId: 562]
d4m8ta_ : (GLY534) (LEU568) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4laqh_ : (SER56) (THR70) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ndra1 : (GLY130) (PRO158) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
d2xv3a_ : (GLN107) (LEU128) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1jvla_ : (GLU106) (LEU127) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d1sqlj_ : (LEU4) (TRP35) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2j85a1 : (GLY78) (TRP116) [view usage] : d.321.1.1 |STIV B116-like |STIV B116-like |STIV B116-like |Hypothetical protein B116 |Sulfolobus turreted icosahedral virus, STIV [TaxId: 269145]
d1j7ma_ : (LYS38) (PHE55) [view usage] : g.14.1.2 |Kringle-like |Kringle-like |Fibronectin type II module |Gelatinase A (MMP-2) type II modules |Human (Homo sapiens) [TaxId: 9606]
d1kcwa5 : (ILE856) (ARG883) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ceruloplasmin |Human (Homo sapiens) [TaxId: 9606]
d3k3qa_ : (GLU71) (ASP87) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Llama (Lama glama) [TaxId: 9844]
d1wmra2 : (SER324) (ASP341) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d4qo1a_ : (THR57) (SER72) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2jc5a_ : (ASP78) (PHE100) [view usage] : d.151.1.0 |DNase I-like |DNase I-like |automated matches |automated matches |Neisseria meningitidis [TaxId: 487]
d1o4ya_ : (THR37) (SER68) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |beta-Agarase A |Zobellia galactanivorans [TaxId: 63186]
d1we5a1 : (ASN666) (ASN692) [view usage] : b.150.1.1 |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Escherichia coli [TaxId: 562]
d4maoa_ : (GLY534) (LEU568) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, e.3, c.2, c.6, b.29, c.82, b.47, c.66, d.144, c.37, d.151, b.18, b.121, d.96, b.6, b.1, b.96, c.73, b.62, b.55,
d.142, a.4, b.97, b.7, d.4, b.17, b.12, g.3, b.150, g.14, d.288, d.321, d.274