Tableau information
Concept source: d2arha1 amino acid (a.a.) range (LEU48)(PHE67)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU48) (PHE53) E1
(ARG56) (GLN61) H2
(GLN61) (PHE67) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 124.4° H2
E3 161.7° 50.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cqoa1 : (THR64) (GLY87) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Morone saxatilis [TaxId: 34816]
d2pnxa1 : (GLU208) (HIS223) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |Inhibitor of growth protein 4, Ing4 |Human (Homo sapiens) [TaxId: 9606]
d1kz7b_ : (MET1) (THR43) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
d1c8pa_ : (HIS34) (ASN57) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d1x4ya1 : (PHE44) (GLU65) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Brother of CDO precursor (BOC) |Mouse (Mus musculus) [TaxId: 10090]
d4iuga4 : (LEU820) (ASN839) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Fungus (Aspergillus oryzae) [TaxId: 5062]
d1rxkb_ : (GLY37) (ALA63) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d1gska2 : (SER313) (THR340) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Spore coat protein A, CotA |Bacillus subtilis [TaxId: 1423]
d1bqya_ : (LYS86) (LYS107) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Venom serine protease |Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]
d1rw9a3 : (SER579) (VAL613) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Arthrobacter aurescens [TaxId: 43663]
d2v1wa_ : (HIS3) (GLY19) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1agqd_ : (VAL43) (ILE65) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |Glial cell-derived neurotrophic factor, GDNF |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4hpwa_ : (PRO252) (SER269) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1k12a_ : (THR72) (GLY95) [view usage] : b.18.1.15 |Galactose-binding domain-like |Galactose-binding domain-like |Fucose binding lectin |Fucose binding lectin |European eel (Anguilla anguilla) [TaxId: 7936]
d174la_ : (GLY23) (LYS60) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d1d5ta1 : (SER44) (ILE77) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |Guanine nucleotide dissociation inhibitor, GDI |Cow (Bos taurus) [TaxId: 9913]
d2qw7c_ : (VAL55) (VAL78) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2z1aa1 : (ARG441) (VAL459) [view usage] : d.114.1.1 |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |Thermus thermophilus [TaxId: 274]
d1cvsa_ : (ASP19) (ALA57) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Basic FGF (FGF2) |Human (Homo sapiens) [TaxId: 9606]
d2v5eb_ : (VAL42) (CYS68) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ea9c1 : (VAL37) (LYS58) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Maltogenic amylase, N-terminal domain N |Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
d3k8ou_ : (GLN44) (GLY71) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Human (Homo sapiens) [TaxId: 9606]
d2asea1 : (LYS5) (TYR40) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
d2wk5a3 : (TRP437) (ASP463) [view usage] : d.41.3.0 |alpha/beta-Hammerhead |Pyrimidine nucleoside phosphorylase C-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4o6za_ : (HIS326) (THR374) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2gh0c_ : (ARG124) (CYS150) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jgka_ : (MET1) (VAL18) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Candoxin |Malayan krait (Bungarus candidus) [TaxId: 92438]
d1jqqa_ : (ASP22) (LYS36) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Peroxisomal membrane protein Pex13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2pbka_ : (GLU38) (GLY57) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |KSHV protease |Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]
d1tg7a2 : (ILE823) (ASN842) [view usage] : b.18.1.27 |Galactose-binding domain-like |Galactose-binding domain-like |Beta-galactosidase LacA, domains 4 and 5 |Beta-galactosidase LacA, domains 4 and 5 |Penicillium sp. [TaxId: 5081]
d4o6zc_ : (HIS326) (THR374) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3fubd_ : (VAL42) (CYS68) [view usage] : g.17.1.2 |Cystine-knot cytokines |Cystine-knot cytokines |Transforming growth factor (TGF)-beta |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q3ga_ : (SER0) (GLY20) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gh0d_ : (ARG124) (CYS150) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d169la_ : (TYR24) (THR59) [view usage] : d.2.1.3 |Lysozyme-like |Lysozyme-like |Phage lysozyme |Phage T4 lysozyme |Bacteriophage T4 [TaxId: 10665]
d2gyra_ : (ARG6) (PHE31) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hk4a_ : (PRO252) (SER269) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1qhva_ : (SER430) (ASP462) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 2 [TaxId: 10515]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.26, b.30, b.47, c.56, b.40, c.37, d.2, b.18, b.6, b.1, d.108, b.42, b.21, d.41, b.34, c.3, b.61, g.17, b.36,
g.7, b.57, g.50, d.114