Tableau information
Concept source: d1txxa_ amino acid (a.a.) range (LYS3)(TRP28)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS3) (THR8) E1
(ASP13) (ALA19) H2
(ALA22) (TRP28) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -118.7° H2
E3 -61.5° -141.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3tuid1 : (GLY66) (PHE88) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2dg2a_ : (PRO113) (GLU138) [view usage] : c.104.1.0 |YjeF N-terminal domain-like |YjeF N-terminal domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1y0bd_ : (VAL153) (LEU175) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine phosphoribosyltransferase |Bacillus subtilis [TaxId: 1423]
d1v8pa_ : (GLU4) (LEU32) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
d2hhld_ : (LYS29) (PHE44) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gwoa_ : (VAL195) (THR225) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Salmonella enterica [TaxId: 99287]
d1zl3a1 : (PRO252) (SER273) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Escherichia coli [TaxId: 562]
d1ltle_ : (SER92) (GLY113) [view usage] : b.40.4.11 |OB-fold |Nucleic acid-binding proteins |DNA replication initiator (cdc21/cdc54) N-terminal domain |DNA replication initiator (cdc21/cdc54) N-terminal domain |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1fpxa2 : (ASP288) (GLU321) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Isoflavone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d3uvtc_ : (VAL324) (ILE343) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3j38r_ : (ILE95) (GLN118) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2xzmv_ : (VAL96) (SER121) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1fiqb2 : (GLU254) (PRO276) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |Xanthine oxidase, domain 3 (?) |Cow (Bos taurus) [TaxId: 9913]
d2ajra_ : (GLY60) (GLU89) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Putative sugar kinase TM0828 |Thermotoga maritima [TaxId: 2336]
d2fr0a1 : (GLY1840) (PRO1866) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Erythromycin synthase, eryAI, 1st ketoreductase module |Saccharopolyspora erythraea [TaxId: 1836]
d1d5ta1 : (ILE77) (VAL104) [view usage] : c.3.1.3 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |GDI-like N domain |Guanine nucleotide dissociation inhibitor, GDI |Cow (Bos taurus) [TaxId: 9913]
d1xoaa_ : (LYS3) (PHE27) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |Thioredoxin |Escherichia coli [TaxId: 562]
d1kcgb_ : (LEU134) (THR162) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d4p8sa_ : (ASN261) (THR290) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ubob_ : (GLY79) (GLY108) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d1kqfb1 : (ARG156) (GLY187) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Formate dehydrogenase N, iron-sulfur (beta) subunit |Escherichia coli [TaxId: 562]
d1r3fa1 : (PRO252) (SER273) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Escherichia coli [TaxId: 562]
d2qyoa2 : (ASP293) (GLU326) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |automated matches |Medicago truncatula [TaxId: 3880]
d3eubk1 : (GLU254) (PRO281) [view usage] : d.145.1.3 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |CO dehydrogenase flavoprotein N-terminal domain-like |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2isba_ : (GLY29) (HIS63) [view usage] : c.8.9.1 |The "swivelling" beta/beta/alpha domain |FumA C-terminal domain-like |FumA C-terminal domain-like |Fumarate hydratase class I beta subunit |Archaeoglobus fulgidus [TaxId: 2234]
d2gtha2 : (GLY274) (PHE296) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |Murine hepatitis virus, MHV [TaxId: 11138]
d2d04c_ : (LEU31) (LEU56) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Curculigo latifolia [TaxId: 4676]
d2kp1a_ : (VAL9) (TYR33) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |automated matches |Fungus (Humicola insolens) [TaxId: 34413]
d1iawa_ : (LEU147) (TRP163) [view usage] : c.52.1.9 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NaeI |Restriction endonuclease NaeI |Nocardia aerocolonigenes [TaxId: 68170]
d4dnxa1 : (GLY57) (GLU88) [view usage] : b.122.1.0 |PUA domain-like |PUA domain-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 572477]
d1pbaa_ : (VAL12) (LYS39) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase B |Pig (Sus scrofa) [TaxId: 9823]
d3ui4a_ : (GLY83) (GLY129) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4iqfa1 : (PRO34) (LEU64) [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1fp2a2 : (ASP288) (GLU321) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Isoflavone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1q47b_ : (ARG31) (GLY50) [view usage] : b.69.12.1 |7-bladed beta-propeller |Sema domain |Sema domain |Semaphorin 3a |Mouse (Mus musculus) [TaxId: 10090]
d1ayea2 : (GLY9) (TRP38) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d2jg5a_ : (GLY57) (ASP84) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2abqa1 : (GLY57) (GLU84) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Fructose 1-phosphate kinase FruB |Bacillus halodurans [TaxId: 86665]
d4iqfb1 : (PRO34) (LEU64) [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1dbga_ : (GLN26) (ALA50) [view usage] : b.80.1.4 |Single-stranded right-handed beta-helix |Pectin lyase-like |Chondroitinase B |Chondroitinase B |Pedobacter heparinus [TaxId: 984]
d1tota1 : (GLU26) (LEU49) [view usage] : g.44.1.6 |RING/U-box |RING/U-box |ZZ domain |CREB-binding protein, CBP |Mouse (Mus musculus) [TaxId: 10090]
d1y0ba1 : (VAL153) (LEU175) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine phosphoribosyltransferase |Bacillus subtilis [TaxId: 1423]
d1k8wa3 : (PRO252) (SER273) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.10, c.94, c.2, d.58, b.69, i.1, c.108, c.66, c.72, b.40, c.37, c.47, c.104, d.169, b.122, c.8, c.61, c.120, c.52,
d.145, c.3, c.65, d.26, g.44, b.78, d.294