Tableau information
Concept source: d4bnda_ amino acid (a.a.) range (THR178)(GLY211)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR178) (VAL184) E1
(ASN188) (ASN201) H2
(ILE207) (GLY211) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 66.2° H2
E3 -135.4° 151.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1z88a1 : (VAL23) (ASP46) [view usage] : c.108.1.12 |HAD-like |HAD-like |Class B acid phosphatase, AphA |Class B acid phosphatase, AphA |Salmonella typhimurium [TaxId: 90371]
d4kzoa_ : (GLY177) (LYS212) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4f5da_ : (LEU198) (ASP223) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d2og4a_ : (GLN2180) (PHE2206) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Saccharomyces cerevisiae [TaxId: 285006]
d1hkwa2 : (SER266) (GLY302) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Mycobacterium tuberculosis [TaxId: 1773]
d2q1wa_ : (GLY228) (GLU256) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
d2ra2f_ : (ASN39) (ALA53) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein YgdI |Salmonella typhimurium [TaxId: 90371]
d1g9ng_ : (GLY329) (ASN362) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d4le5a1 : (ASN58) (LEU102) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Campylobacter jejuni [TaxId: 195099]
d4bnda_ : (THR178) (GLY211) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d4kttb1 : (ARG74) (LEU110) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d2ra2d_ : (LYS40) (ALA53) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein YgdI |Salmonella typhimurium [TaxId: 90371]
d2pfea_ : (GLY224) (GLY245) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Thermobifida fusca YX [TaxId: 269800]
d1c4pa_ : (GLY191) (GLU218) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d2z1aa1 : (GLN373) (LYS388) [view usage] : d.114.1.1 |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain |Thermus thermophilus [TaxId: 274]
d3tbja_ : (ASP189) (GLU215) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d1myra_ : (ASN381) (GLU409) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |White mustard (Sinapis alba) [TaxId: 3728]
d1z6aa3 : (PRO3) (ASP470) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1fmba_ : (THR30) (THR51) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |EIAV protease |Equine infectious anemia virus [TaxId: 11665]
d2hbva1 : (ARG51) (ALA79) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d1j2ta_ : (GLY86) (GLY119) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d3tefa_ : (SER247) (ASP269) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1c7sa3 : (ASP418) (ASP448) [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |Bacterial chitobiase (beta-N-acetylhexosaminidase) |Serratia marcescens [TaxId: 615]
d1fg4a_ : (ALA18) (SER36) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d4jcna_ : (TYR258) (GLN282) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d2v70a_ : (THR643) (LEU661) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4iwma_ : (VAL215) (ASP248) [view usage] : c.135.1.0 |NIF3 (NGG1p interacting factor 3)-like |NIF3 (NGG1p interacting factor 3)-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1id0a_ : (ARG335) (ASP365) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase PhoQ domain |Escherichia coli [TaxId: 562]
d1o6da_ : (GLY73) (GLY100) [view usage] : c.116.1.3 |alpha/beta knot |alpha/beta knot |YbeA-like |Hypothetical protein TM0844 |Thermotoga maritima [TaxId: 2336]
d3d3za_ : (ASP166) (GLU192) [view usage] : d.124.1.0 |Ribonuclease Rh-like |Ribonuclease Rh-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d2auta_ : (VAL23) (ASP46) [view usage] : c.108.1.12 |HAD-like |HAD-like |Class B acid phosphatase, AphA |Class B acid phosphatase, AphA |Salmonella typhimurium [TaxId: 90371]
d3brqb_ : (VAL117) (SER146) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2g19a_ : (THR308) (TYR329) [view usage] : b.82.2.15 |Double-stranded beta-helix |Clavaminate synthase-like |proly-4-hydroxylase (P4H, PHD) like |HIF-P4H2, PHD2 |Human (Homo sapiens) [TaxId: 9606]
d3dr4c_ : (GLY163) (GLY184) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
d2gp3b_ : (MET242) (ALA264) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
d3dr4a_ : (GLY163) (GLY184) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Caulobacter crescentus [TaxId: 190650]
d3dxta_ : (VAL246) (ALA268) [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, b.82, c.67, c.2, c.108, b.47, c.92, c.77, c.93, c.135, b.50, d.122, c.37, c.47, c.97, d.124, c.116, c.125, b.38,
d.15, d.130, d.387, d.172, d.114