Protein Concepts Dictionary

Tableau information

Concept source:  d2haza1  amino acid (a.a.) range (TYR524)(GLY550)

nSSEs in this Concept: 3

String of secondary struct.elems. (SSEs) defining this concept: EEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (TYR524)  (ALA530) E1
	  (GLU534)  (TRP540) E2
	  (LYS544)  (GLY550) H3

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                   
E2      152.0°   E2            
H3       70.8°   98.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2au7a_ :    (VAL90)  (ILE120)   [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
 d2hgjf1 :     (ALA5)   (ASN29)   [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Thermus thermophilus [TaxId: 274]
 d1w97l2 :   (LEU191)  (SER229)   [view usage] : c.55.1.11 |Ribonuclease H-like motif |Actin-like ATPase domain |Cyto-EpsL domain |Cytoplasmic domain of general secretion pathway protein L, EpsL |Vibrio cholerae [TaxId: 666]
 d4kqob2 :   (GLY429)  (VAL465)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1rypl_ :   (SER174)  (GLY205)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1irul_ :   (VAL174)  (GLY201)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Cow (Bos taurus) [TaxId: 9913]
 d4hsvc_ :    (ALA39)   (HIS67)   [view usage] : d.9.1.1 |IL8-like |Interleukin 8-like chemokines |Interleukin 8-like chemokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2j55j_ :   (GLN284)  (THR308)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d1tmqb_ :   (ASP565)  (THR599)   [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Trypsin/alpha-amylase inhibitor RBI |Eleusine coracana, seeds [TaxId: 4511]
 d4bwsf_ :   (ASP280)  (GLY311)   [view usage] : d.76.1.1 |GYF/BRK domain-like |GYF domain |GYF domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1t95a2 :    (VAL14)   (GLY40)   [view usage] : d.235.1.2 |FYSH domain |FYSH domain |Hypothetical protein AF0491, N-terminal domain |Hypothetical protein AF0491, N-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
 d3eevc_ :   (TYR148)  (TRP179)   [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |automated matches |Vibrio cholerae [TaxId: 243277]
 d1lgya_ :   (GLY220)  (VAL249)   [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizopus niveus [TaxId: 4844]
 d2gc4a_ :   (GLN284)  (THR308)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d4kqoa2 :   (GLY429)  (VAL465)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d2semb_ :   (TRP292)  (CYS309)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains |Caenorhabditis elegans, SEM-5 [TaxId: 6239]
 d4r17k_ :   (SER174)  (GLY205)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2qhfa_ :   (GLY160)  (LEU186)   [view usage] : d.258.1.0 |Chorismate synthase, AroC |Chorismate synthase, AroC |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d3l4md_ :   (GLN284)  (THR308)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d1jeyb1 :   (GLN312)  (MET331)   [view usage] : b.131.1.2 |SPOC domain-like |SPOC domain-like |Ku80 subunit middle domain |Ku80 subunit middle domain |Human (Homo sapiens) [TaxId: 9606]
 d2j56h_ :   (GLN284)  (THR308)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d1ob9a_ :    (GLU95)  (GLU129)   [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Holliday-junction resolvase SSO1176 |Sulfolobus solfataricus [TaxId: 2287]
 d1bipa_ :    (MET64)   (THR99)   [view usage] : a.52.1.2 |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |Proteinase/alpha-amylase inhibitors |Trypsin/alpha-amylase inhibitor RBI |Eleusine coracana, seeds [TaxId: 4511]
 d1p9qc2 :     (ALA7)   (GLY34)   [view usage] : d.235.1.2 |FYSH domain |FYSH domain |Hypothetical protein AF0491, N-terminal domain |Hypothetical protein AF0491, N-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3,    c.69,    b.81,    b.69,    b.40,    c.55,   d.153,     b.1,    c.52,    b.34,     d.9,    a.52,    c.22,   d.258,    d.76,   b.131,   d.235