Tableau information
Concept source: d2xqza_ amino acid (a.a.) range (ALA257)(ILE285)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA257) (PRO268) E1
(LYS271) (ASP277) E2
(ASP277) (ILE285) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.5° E2
H3 138.3° -36.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3rf1b_ : (TRP179) (HIS193) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Campylobacter jejuni [TaxId: 354242]
d2ve3a_ : (GLY320) (ASP352) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1vixa2 : (ASN209) (VAL245) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Peptidase T (tripeptidase) |Escherichia coli [TaxId: 562]
d1mdva_ : (ASP7) (LYS26) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
d1kwja_ : (ASP2) (LEU24) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c7 (cytochrome c551.5, PpcA) |Desulfuromonas acetoxidans [TaxId: 891]
d3e7ga_ : (ARG83) (ALA104) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bfda_ : (ALA257) (LYS290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Citrobacter sedlakii [TaxId: 67826]
d4jshb_ : (ARG299) (SER320) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3byda_ : (ALA258) (LEU291) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Klebsiella oxytoca [TaxId: 571]
d3rf1a_ : (TRP179) (HIS193) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Campylobacter jejuni [TaxId: 354242]
d2zd2a1 : (ALA1014) (VAL1060) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d1etha2 : (SER1) (ILE20) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2dmaa_ : (GLY160) (LEU196) [view usage] : d.81.4.1 |FwdE/GAPDH domain-like |V-type ATPase subunit E-like |V-type ATPase subunit E |V-type ATP synthase subunit E |Pyrococcus horikoshii [TaxId: 53953]
d1tdta_ : (VAL45) (ASN70) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Mycobacterium bovis [TaxId: 1765]
d1woga_ : (ASP136) (ALA169) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Agmatinase |Deinococcus radiodurans [TaxId: 1299]
d1ofwa_ : (SER12) (LYS43) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d3e65b_ : (VAL79) (THR99) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Mouse (Mus musculus) [TaxId: 10090]
d4nosa_ : (VAL85) (ALA104) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Human (Homo sapiens) [TaxId: 9606]
d1lpab2 : (LYS1) (ILE20) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4pmya_ : (SER30) (LYS59) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1qw6a_ : (ARG299) (SER320) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2moea_ : (GLY89) (GLY132) [view usage] : d.10.1.0 |DNA-binding domain |DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4d1na_ : (ARG304) (SER325) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4a61a1 : (LYS44) (SER89) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |automated matches |Escherichia coli [TaxId: 562]
d1ymxa_ : (ALA257) (LEU290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d3vlwa_ : (PRO10) (ASN40) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Sphingomonas sp. [TaxId: 90322]
d1uova_ : (LYS354) (ASN396) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2m87a_ : (ILE86) (GLU103) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 1185418]
d1kgqa_ : (VAL45) (ILE69) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Mycobacterium bovis [TaxId: 1765]
d3ej8a_ : (VAL85) (ALA104) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lo7a_ : (PHE119) (SER141) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |4-hydroxybenzoyl-CoA thioesterase |Pseudomonas sp., CBS-3 [TaxId: 306]
d2m3la_ : (LYS122) (ARG144) [view usage] : g.90.1.1 |E6 C-terminal domain-like |E6 C-terminal domain-like |E6 C-terminal domain-like |automated matches |Human papillomavirus type 51 [TaxId: 10595]
d2dm9a1 : (GLY160) (LEU196) [view usage] : d.81.4.1 |FwdE/GAPDH domain-like |V-type ATPase subunit E-like |V-type ATPase subunit E |V-type ATP synthase subunit E |Pyrococcus horikoshii [TaxId: 53953]
d3hsqa_ : (TYR179) (GLY201) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Leptospira interrogans [TaxId: 173]
d1n2na_ : (VAL79) (ALA98) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Mouse (Mus musculus) [TaxId: 10090]
d2wqka_ : (LYS186) (ALA212) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d3e7gc_ : (VAL85) (ALA104) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4wf8a_ : (ARG1155) (ARG1180) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d1snzb_ : (THR41) (GLN67) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Human (Homo sapiens) [TaxId: 9606]
d3bfca_ : (ALA257) (GLU288) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Citrobacter sedlakii [TaxId: 67826]
d1d0ca_ : (PRO71) (SER90) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Cow (Bos taurus) [TaxId: 9913]
d3hlwb_ : (ALA257) (LEU290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d1gpea2 : (PHE435) (GLU462) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Glucose oxidase |Penicillium amagasakiense [TaxId: 63559]
d3o9wa1 : (ALA111) (ALA152) [view usage] : d.19.1.0 |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2gb5a1 : (ARG42) (LYS96) [view usage] : d.113.1.4 |Nudix |Nudix |NADH pyrophosphatase |NADH pyrophosphatase |Escherichia coli [TaxId: 562]
d1nsia_ : (ARG83) (ALA104) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Human (Homo sapiens) [TaxId: 9606]
d1gpla2 : (ALA1) (THR20) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Guinea pig (Cavia porcellus) [TaxId: 10141]
d1hpla2 : (ASN1) (ILE20) [view usage] : c.69.1.19 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Pancreatic lipase, N-terminal domain |Pancreatic lipase, N-terminal domain |Horse (Equus caballus) [TaxId: 9796]
d3ouea2 : (LYS245) (SER264) [view usage] : a.138.1.0 |Multiheme cytochromes |Multiheme cytochromes |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1fnoa3 : (ASN209) (VAL245) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Peptidase T (tripeptidase) |Salmonella typhimurium [TaxId: 90371]
d2e9xb2 : (ASP24) (GLN56) [view usage] : d.344.1.0 |GINS/PriA/YqbF domain |PriA/YqbF domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fb2b_ : (LYS239) (SER259) [view usage] : c.1.28.3 |TIM beta/alpha-barrel |Radical SAM enzymes |MoCo biosynthesis proteins |Molybdenum cofactor biosynthesis protein A MoaA |Staphylococcus aureus [TaxId: 1280]
d1ddla_ : (PRO29) (THR61) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
d2pt7b_ : (LYS54) (ARG73) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Hexameric traffic ATPase, HP0525 |Helicobacter pylori [TaxId: 210]
d3ouea1 : (THR166) (GLY186) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1ddlc_ : (PRO29) (THR61) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
d3znya_ : (ALA257) (LEU290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1mx1b_ : (GLU2524) (ALA2552) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d4jsha_ : (ARG299) (SER320) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1e57a_ : (SER29) (THR64) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |PHMV (Physalis mottle virus) [TaxId: 72539]
d3e9la1 : (THR1799) (GLN1830) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d3hreb_ : (ALA257) (LEU290) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d1c7ja_ : (ARG460) (LEU483) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Thermophilic para-nitrobenzyl esterase (PNB esterase) |Bacillus subtilis [TaxId: 1423]
d1mdvb_ : (GLY8) (VAL28) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
d2m6ka_ : (GLN189) (GLY220) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1d0cb_ : (LYS69) (SER90) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Cow (Bos taurus) [TaxId: 9913]
d1s9ha_ : (CYS425) (GLN439) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d3kcwa_ : (GLY60) (SER82) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma microsporum [TaxId: 34462]
d1qb7a_ : (SER26) (SER51) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Leishmania donovani [TaxId: 5661]
d4rnld_ : (GLN43) (ALA69) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Streptomyces platensis [TaxId: 58346]
d1mzva_ : (TYR27) (SER51) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Leishmania tarentolae [TaxId: 5689]
d1z7qk1 : (ILE180) (GLN198) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1c4ka2 : (PHE496) (GLY528) [view usage] : c.67.1.5 |PLP-dependent transferase-like |PLP-dependent transferases |Ornithine decarboxylase major domain |Ornithine decarboxylase major domain |Lactobacillus sp., strain 30a [TaxId: 1591]
d1wyta1 : (GLY284) (ARG312) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase (decarboxylating) subunit 1 |Thermus thermophilus [TaxId: 274]
d1wraa1 : (THR313) (LYS330) [view usage] : d.157.1.8 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Pce catalytic domain-like |Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1df1a_ : (VAL79) (ALA98) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Mouse (Mus musculus) [TaxId: 10090]
d1xtfa_ : (ASP191) (GLY234) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1y3na1 : (PRO10) (ASN40) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Alginate-binding periplasmic protein AlgQ1 |Sphingomonas sp. [TaxId: 28214]
d3iwpa_ : (PHE221) (ASN270) [view usage] : c.1.30.0 |TIM beta/alpha-barrel |CutC-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gfva_ : (LYS172) (GLY201) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d1wuua1 : (LEU72) (TYR116) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Human (Homo sapiens) [TaxId: 9606]
d2gb5b1 : (ARG42) (LYS96) [view usage] : d.113.1.4 |Nudix |Nudix |NADH pyrophosphatase |NADH pyrophosphatase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.67, c.69, b.81, c.94, a.104, d.58, b.30, b.47, c.92, d.157, d.92, c.42, c.37, d.104, c.55, d.153, d.14, b.121,
d.81, d.174, b.1, d.38, d.19, c.61, a.4, a.138, b.7, d.16, d.113, c.106, d.381, g.90, d.10, d.344