Tableau information
Concept source: d1bl9a2 amino acid (a.a.) range (PHE425)(SER450)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE425) (LYS431) E1
(LEU435) (PHE441) E2
(ASP444) (SER450) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.5° E2
H3 30.1° -137.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1z8ra_ : (ALA9) (CYS31) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human coxsackievirus b4 [TaxId: 12073]
d1a2ia_ : (ASP7) (HIS35) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
d1nywb_ : (ASP81) (ASN107) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d1t9ka_ : (THR7) (GLU27) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Probable methylthioribose-1-phosphate isomerase TM0911 |Thermotoga maritima [TaxId: 2336]
d2hi2a_ : (GLU80) (LYS104) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |automated matches |Neisseria gonorrhoeae [TaxId: 485]
d1v1oa2 : (TYR168) (GLY195) [view usage] : d.15.6.1 |beta-Grasp (ubiquitin-like) |Superantigen toxins, C-terminal domain |Superantigen toxins, C-terminal domain |Exotoxin 1 (SET1, Superantigen-like protein 7) |Staphylococcus aureus [TaxId: 1280]
d1zofb_ : (ALA12) (LEU31) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
d1ekeb_ : (MSE1) (LEU36) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |Class II ribonuclease H (RNase HII) |Methanococcus jannaschii [TaxId: 2190]
d2mb7a_ : (MET3) (HIS32) [view usage] : d.10.1.0 |DNA-binding domain |DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jcua_ : (TYR96) (PHE134) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein MTH1692 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2g0jc_ : (GLN3) (ASN45) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d4mg3b_ : (GLY8) (ASN30) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Coxsackievirus a16 [TaxId: 231417]
d1xxea2 : (LEU147) (ALA177) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1w99a3 : (LEU607) (THR641) [view usage] : b.18.1.3 |Galactose-binding domain-like |Galactose-binding domain-like |delta-Endotoxin, C-terminal domain |delta-Endotoxin, C-terminal domain |Bacillus thuringiensis, Cry4Ba [TaxId: 1428]
d2jn9a1 : (ALA15) (LEU44) [view usage] : b.45.3.1 |Split barrel-like |YkvR-like |YkvR-like |Uncharacterized protein YkvR |Bacillus subtilis [TaxId: 1423]
d4drra_ : (SER197) (ASN221) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rotavirus sp. [TaxId: 10970]
d4l8fa_ : (SER203) (LYS254) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d2bkla1 : (THR172) (THR202) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
d1nxma_ : (ASP81) (ASN107) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d2o2xa1 : (GLU183) (GLY212) [view usage] : c.108.1.19 |HAD-like |HAD-like |Histidinol phosphatase-like |Hypothetical protein Mll2559 |Mesorhizobium loti [TaxId: 381]
d1ogqa_ : (GLY40) (LEU75) [view usage] : c.10.2.8 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Polygalacturonase inhibiting protein PGIP |Polygalacturonase inhibiting protein PGIP |French bean (Phaseolus vulgaris) [TaxId: 3885]
d4mg3a_ : (GLY8) (ASN30) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Coxsackievirus a16 [TaxId: 231417]
d4um8a1 : (GLY126) (CYS155) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hzva2 : (PHE425) (GLN449) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
d1uuza_ : (ASN67) (THR97) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Pseudomonas aeruginosa [TaxId: 287]
d2ge8i_ : (ARG68) (GLN104) [view usage] : d.254.1.2 |Nucleocapsid protein dimerization domain |Nucleocapsid protein dimerization domain |Coronavirus nucleocapsid protein |Coronavirus nucleocapsid protein |Avian infectious bronchitis virus [TaxId: 11120]
d1oyra2 : (ALA160) (SER183) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH, domain 2 |Bacillus subtilis [TaxId: 1423]
d4l5fe_ : (GLU311) (CYS333) [view usage] : b.1.18.4 |Immunoglobulin-like beta-sandwich |E set domains |Class II viral fusion proteins C-terminal domain |automated matches |Dengue virus 1 [TaxId: 11053]
d1wina_ : (GLU13) (ALA52) [view usage] : d.43.2.1 |EF-Ts domain-like |Band 7/SPFH domain |Band 7/SPFH domain |Flotillin-2 |Mouse (Mus musculus) [TaxId: 10090]
d1ww9a2 : (ASN260) (MET280) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Terminal oxygenase component of carbazole CarAa |Janthinobacterium sp. J3 [TaxId: 213804]
d2dwra_ : (ASN195) (GLY222) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human rotavirus a [TaxId: 10941]
d2g0ib_ : (GLN3) (ASN45) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d1c47a4 : (ARG498) (GLN529) [view usage] : d.129.2.1 |TBP-like |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3w95a_ : (GLY8) (ASN30) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Human enterovirus 71 [TaxId: 103922]
d2d04g_ : (SER20) (GLY49) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Curculigo latifolia [TaxId: 4676]
d1fwxb2 : (ASP188) (ALA217) [view usage] : b.69.3.1 |7-bladed beta-propeller |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |Nitrous oxide reductase, N-terminal domain |Paracoccus denitrificans [TaxId: 266]
d3fdea_ : (ASP473) (LEU515) [view usage] : b.122.1.12 |PUA domain-like |PUA domain-like |SRA domain-like |E3 ubiquitin-protein ligase UHRF1 |Mouse (Mus musculus) [TaxId: 10090]
d4l7qa_ : (SER203) (LYS254) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d2dy4a2 : (GLY827) (LYS859) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1bg5a1 : (LYS197) (PRO246) [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class alpha GST |Schistosoma japonicum [TaxId: 6182]
d2erma_ : (LEU98) (ASN120) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d2ixlc_ : (ASP81) (ASN107) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d4ge1c_ : (GLN108) (TYR133) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Rhodnius prolixus [TaxId: 13249]
d1agsa2 : (PRO55) (LYS77) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Human (Homo sapiens), (a1-1) [TaxId: 9606]
d2ca1a1 : (ARG286) (VAL324) [view usage] : d.254.1.2 |Nucleocapsid protein dimerization domain |Nucleocapsid protein dimerization domain |Coronavirus nucleocapsid protein |Coronavirus nucleocapsid protein |Avian infectious bronchitis virus [TaxId: 11120]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.8, c.10, b.82, b.69, c.108, b.29, b.47, c.124, d.129, c.23, c.47, c.55, b.60, b.18, d.14, b.122, b.1, b.45, b.42,
a.138, a.45, d.15, d.254, d.24, d.64, d.101, d.233, b.78, d.43, d.115, d.10