Tableau information
Concept source: d1t2ma1 amino acid (a.a.) range (LEU19)(GLY49)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU19) (ALA23) E1
(GLY33) (SER38) E2
(GLY43) (GLY49) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 150.9° E2
H3 109.8° -73.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2pk7a1 : (GLY33) (LEU59) [view usage] : b.171.1.1 |Trm112p-like |Trm112p-like |Trm112p-like |Uncharacterized protein PFL1779 |Pseudomonas fluorescens [TaxId: 294]
d2j7ad_ : (SER322) (SER354) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d4i4zb_ : (GLY56) (MET108) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Synechocystis sp. [TaxId: 1111708]
d2j7ab_ : (SER322) (GLN351) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d2cbia2 : (MET391) (GLN421) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d2xpka2 : (MET391) (GLN421) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |automated matches |Clostridium perfringens [TaxId: 1502]
d1dhja_ : (MET1) (ASN34) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d1ihna_ : (SER29) (LYS50) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein MT938 (MTH938) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1nw3a_ : (MET291) (LYS330) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Human (Homo sapiens) [TaxId: 9606]
d2h9fa1 : (ASP85) (GLY119) [view usage] : d.21.1.4 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PA0793-like |Hypothetical protein PA0793 |Pseudomonas aeruginosa [TaxId: 287]
d2isga_ : (ASP191) (GLY234) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d2vr0e_ : (SER322) (GLN351) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d2isea_ : (ASP191) (GLY234) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d1sfxb_ : (PHE62) (MSE103) [view usage] : a.4.5.50 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |TrmB-like |Hypothetical protein AF2008 |Archaeoglobus fulgidus [TaxId: 2234]
d1fc7a3 : (GLY164) (GLY192) [view usage] : b.36.1.3 |PDZ domain-like |PDZ domain-like |Tail specific protease PDZ domain |Photosystem II D1 C-terminal processing protease |Algae (Scenedesmus obliquus) [TaxId: 3088]
d2wl7a_ : (PHE112) (GLY144) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2gl5a1 : (THR364) (LEU395) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Putative dehydratase protein STM2273 |Salmonella typhimurium [TaxId: 90371]
d4i4za_ : (GLY56) (MET108) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Synechocystis sp. [TaxId: 1111708]
d1y8ta1 : (VAL233) (ALA258) [view usage] : b.36.1.4 |PDZ domain-like |PDZ domain-like |HtrA-like serine proteases |Protease PepD |Mycobacterium tuberculosis [TaxId: 1773]
d3m9qa_ : (THR32) (LEU92) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3deba_ : (PHE198) (GLY240) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d3m3ta_ : (THR24) (LEU50) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |SARS coronavirus [TaxId: 227859]
d1wkva1 : (THR97) (LEU124) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Aeropyrum pernix [TaxId: 56636]
d4i7hb_ : (GLN98) (GLY130) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus pyogenes [TaxId: 198466]
d4lmyb_ : (GLN98) (GLY130) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus pyogenes [TaxId: 198466]
d1ddra_ : (MET1) (ASN34) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Escherichia coli [TaxId: 562]
d1o70a2 : (LYS593) (VAL623) [view usage] : b.118.1.1 |FAS1 domain |FAS1 domain |FAS1 domain |Fasciclin I |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1t8qa_ : (GLU243) (LYS263) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d4amha_ : (PHE17) (GLY49) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kfdg_ : (VAL60) (SER95) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d4c5ja_ : (THR39) (GLY72) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d4amhb_ : (PHE17) (GLY49) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wkvb_ : (THR97) (LEU124) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Aeropyrum pernix [TaxId: 56636]
d2k28a_ : (GLY19) (GLN58) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4e6ma2 : (THR364) (LEU395) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Putative dehydratase protein STM2273 |Salmonella enterica [TaxId: 90371]
d4i7ha_ : (GLN98) (GLY130) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus pyogenes [TaxId: 198466]
d1s4fa_ : (THR385) (GLN407) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d3vscb_ : (THR97) (LEU124) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Aeropyrum pernix [TaxId: 272557]
d2o56a2 : (LYS361) (LYS390) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
d1t8qd_ : (GLU243) (LYS263) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d3bq1a2 : (LYS26) (LEU53) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |DinB homolog (DBH) |Sulfolobus acidocaldarius [TaxId: 2285]
d1ydya_ : (GLU243) (LYS263) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1b0pa1 : (THR112) (ARG134) [view usage] : c.36.1.8 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR Pyr module |Pyruvate-ferredoxin oxidoreductase, PFOR, domain I |Desulfovibrio africanus [TaxId: 873]
d2qn0a_ : (PHE198) (GLY240) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d3qida_ : (LEU15) (GLU75) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d2aaib1 : (LEU64) (ARG89) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Castor bean (Ricinus communis), Ricin [TaxId: 3988]
d2j7ah_ : (SER322) (GLN351) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Desulfovibrio vulgaris [TaxId: 882]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.79, b.47, c.66, d.92, c.14, c.72, c.36, c.71, b.42, d.21, b.34, a.4, a.138, b.36, g.7, c.103, b.171, b.118