Tableau information
Concept source: d1myra_ amino acid (a.a.) range (LEU475)(SER500)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU475) (ASN479) E1
(THR484) (LEU488) E2
(LYS489) (SER500) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 143.7° E2
H3 -146.3° -58.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2xnja1 : (THR69) (LEU91) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4heqa_ : (SER123) (VAL146) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |automated matches |Desulfovibrio gigas [TaxId: 879]
d1fg3a_ : (LYS148) (THR175) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Histidinol-phosphate aminotransferase HisC |Escherichia coli [TaxId: 562]
d4h32b_ : (TYR350) (ILE384) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d3vika_ : (TYR463) (THR489) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d2c49b_ : (PRO97) (LEU124) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1h3na2 : (TYR327) (PHE354) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Leucyl-tRNA synthetase (LeuRS) |Thermus thermophilus [TaxId: 274]
d3ga3a_ : (THR970) (VAL988) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a07g_ : (CYS561) (LYS582) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2geya1 : (GLN97) (GLY131) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |Putative hydroxylase AclR |Streptomyces galilaeus [TaxId: 33899]
d1oifa_ : (ASP357) (GLY389) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Thermotoga maritima [TaxId: 2336]
d3giub_ : (HIS2) (LEU26) [view usage] : c.56.4.0 |Phosphorylase/hydrolase-like |Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d2a07f1 : (CYS561) (ARG584) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |Forkhead box protein P2, FOXP2 |Human (Homo sapiens) [TaxId: 9606]
d1mmla_ : (PRO93) (VAL122) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |MMLV reverse transcriptase |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d3vifa_ : (TYR463) (THR489) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d3zp0f_ : (TYR22) (GLY47) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d3ai0a_ : (TYR463) (THR489) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d2c4ea_ : (PRO97) (LEU124) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d1r27a2 : (LYS373) (TRP394) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d1gefb_ : (GLU46) (PHE72) [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Archaeal Holliday junction resolvase Hjc |Pyrococcus furiosus [TaxId: 2261]
d1gefe_ : (GLU46) (PHE72) [view usage] : c.52.1.18 |Restriction endonuclease-like |Restriction endonuclease-like |Hjc-like |Archaeal Holliday junction resolvase Hjc |Pyrococcus furiosus [TaxId: 2261]
d3pbga_ : (LYS381) (GLY412) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |6-phospho-beta-D-galactosidase, PGAL |Lactococcus lactis [TaxId: 1358]
d2d4wa1 : (HIS34) (ASN67) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cellulomonas sp. [TaxId: 40001]
d1bvea_ : (GLY73) (ILE93) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1ogsa2 : (PRO401) (ILE427) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Glucosylceramidase, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2geyc_ : (GLN97) (GLY131) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |Putative hydroxylase AclR |Streptomyces galilaeus [TaxId: 33899]
d3sqfa_ : (GLY78) (MET101) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d2hdca_ : (PHE61) (GLY90) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |Genesis |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4qp0a_ : (PHE66) (ASP100) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d4qp0a_ : (ALA319) (LYS359) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1l3sa2 : (LEU547) (LEU564) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
d1w3ja_ : (ASP357) (GLY389) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Thermotoga maritima [TaxId: 2336]
d1deva_ : (CYS412) (MET456) [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad2 MH2 domain |Human (Homo sapiens) [TaxId: 9606]
d3khbb_ : (GLU9) (ALA30) [view usage] : b.82.2.10 |Double-stranded beta-helix |Clavaminate synthase-like |AlkB-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2geyb_ : (GLN97) (GLY131) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |Putative hydroxylase AclR |Streptomyces galilaeus [TaxId: 33899]
d4hz8a_ : (ASP393) (GLY425) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Uncultured bacterium [TaxId: 77133]
d3cmja_ : (ASP393) (GLY425) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d3qgma_ : (ARG151) (GLY175) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d4gxpa_ : (ASP377) (GLY410) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermotoga maritima [TaxId: 243274]
d1zs7a2 : (CYS66) (ALA84) [view usage] : d.17.6.4 |Cystatin-like |Pre-PUA domain |Hypothetical protein APE0525, N-terminal domain |Hypothetical protein APE0525, N-terminal domain |Aeropyrum pernix [TaxId: 56636]
d4i78c_ : (TYR22) (ILE56) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
d2o9pa_ : (ARG362) (GLY393) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus polymyxa [TaxId: 1406]
d3ifzb_ : (LEU109) (ARG143) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1q16a2 : (LYS373) (TRP394) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d4ptva_ : (ASP360) (GLY392) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Halothermothrix orenii [TaxId: 373903]
d1cfra_ : (ILE3) (ILE28) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Cfr10I |Citrobacter freundii [TaxId: 546]
d1w5ca_ : (ASN303) (ARG334) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d2ro5a_ : (ILE6) (ARG27) [view usage] : b.129.1.3 |Double-split beta-barrel |AbrB/MazE/MraZ-like |AbrB N-terminal domain-like |automated matches |Bacillus subtilis [TaxId: 1423]
d3ahza_ : (TYR463) (THR489) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Neotermes koshunensis [TaxId: 60586]
d3bq1a2 : (ASP97) (GLU116) [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |DinB homolog (DBH) |Sulfolobus acidocaldarius [TaxId: 2285]
d3w53a_ : (ILE442) (ARG469) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Micrococcus antarcticus [TaxId: 86171]
d3ir5a1 : (LYS373) (TRP394) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2a07i_ : (CYS561) (ARG583) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3egwa1 : (LYS373) (TRP394) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2cx0a2 : (CYS66) (ALA84) [view usage] : d.17.6.4 |Cystatin-like |Pre-PUA domain |Hypothetical protein APE0525, N-terminal domain |Hypothetical protein APE0525, N-terminal domain |Aeropyrum pernix [TaxId: 56636]
d3gmja_ : (CYS400) (MET444) [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3sqfb_ : (GLY78) (MET101) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Mason-pfizer monkey virus [TaxId: 11855]
d3wu2a_ : (SER305) (MET331) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Thermosynechococcus vulcanus [TaxId: 32053]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.82, c.67, c.81, c.108, c.56, b.50, c.72, c.23, c.55, f.26, i.5, e.11, b.129, d.17, c.52, b.26, a.4, h.3,
b.43, b.88, b.51