Tableau information
Concept source: d4o9ga_ amino acid (a.a.) range (TRP96)(PHE136)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TRP96) (PHE100) E1
(GLY105) (LEU111) E2
(TYR125) (PHE136) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 160.5° E2
H3 -124.5° 52.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4ozeb2 : (THR203) (GLY239) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d4ozea2 : (THR203) (GLY239) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d3rotb_ : (ASP112) (PRO147) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d2f98c_ : (LEU100) (GLY133) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |automated matches |Streptomyces galilaeus [TaxId: 33899]
d1tcma2 : (ASP585) (GLN632) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |Cyclodextrin glycosyltransferase, C-terminal domain |Bacillus circulans, different strains [TaxId: 1397]
d1vbfb_ : (ARG169) (ASN226) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Sulfolobus tokodaii [TaxId: 111955]
d2bpea_ : (GLY181) (LEU215) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3k9eb_ : (VAL4) (LEU48) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Escherichia coli [TaxId: 217992]
d3p3ca2 : (THR203) (GLY239) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |automated matches |Aquifex aeolicus [TaxId: 63363]
d1e9ya1 : (LYS125) (PHE162) [view usage] : b.85.3.1 |beta-clip |Urease, beta-subunit |Urease, beta-subunit |Urease, beta-subunit |Helicobacter pylori [TaxId: 210]
d2aoqa_ : (GLN182) (THR228) [view usage] : c.52.1.14 |Restriction endonuclease-like |Restriction endonuclease-like |DNA mismatch repair protein MutH from |automated matches |Haemophilus influenzae [TaxId: 727]
d1hfbf_ : (GLU316) (ASN368) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d1hfbg_ : (GLU321) (ASN368) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d1hnvb_ : (GLU53) (THR84) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2f98a1 : (ARG99) (GLY133) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |Aklanonic acid methyl ester cyclase, AknH |Streptomyces galilaeus [TaxId: 33899]
d1snza_ : (THR41) (GLN67) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Human (Homo sapiens) [TaxId: 9606]
d1ihra_ : (GLY174) (TRP213) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d1cf3a2 : (THR432) (SER477) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Glucose oxidase |Aspergillus niger [TaxId: 5061]
d1qxxa_ : (GLY174) (ARG212) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d1ggoa3 : (PRO86) (LYS121) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1k5ka_ : (TRP11) (ASP80) [view usage] : j.40.1.1 |Transactivation protein TAT |Transactivation protein TAT |Transactivation protein TAT |Transactivation protein TAT |Human immunodeficiency virus type 1 [TaxId: 11676]
d1flka1 : (LYS389) (LEU421) [view usage] : b.8.1.1 |TRAF domain-like |TRAF domain-like |MATH domain |TNF receptor associated factor 3 (TRAF3) |Human (Homo sapiens) [TaxId: 9606]
d1p35b_ : (GLY190) (LEU217) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1fa0b4 : (ILE151) (LEU200) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1f02t_ : (LYS298) (ALA336) [view usage] : j.67.1.1 |Translocated intimin receptor (tir) intimin-binding domain |Translocated intimin receptor (tir) intimin-binding domain |Translocated intimin receptor (tir) intimin-binding domain |Translocated intimin receptor (tir) intimin-binding domain |Escherichia coli [TaxId: 562]
d2f98b_ : (LEU100) (GLY133) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |automated matches |Streptomyces galilaeus [TaxId: 33899]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.82, b.30, c.66, c.93, c.72, d.169, d.14, b.85, d.17, d.142, c.52, b.3, d.16, d.218, j.40, b.8, b.28, d.212,
j.67