Tableau information
Concept source: d3u94d_ amino acid (a.a.) range (TYR61)(HIS80)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR61) (ASP66) E1
(GLY68) (GLY72) E2
(GLY72) (HIS80) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.2° E2
H3 -80.9° -107.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3k6ua_ : (GLY328) (VAL351) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Methanosarcina acetivorans [TaxId: 2214]
d3m5ua_ : (ALA183) (LYS214) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
d3ue6c_ : (ASN218) (GLY243) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Vaucheria frigida [TaxId: 195983]
d3fzqa_ : (ALA101) (LYS127) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d1o6eb_ : (VAL54) (CYS89) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Epstein-Barr virus protease |Human herpesvirus 4 [TaxId: 10376]
d4apya_ : (ILE36) (SER69) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d4q34a_ : (GLY220) (PRO259) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
d1sfsa_ : (TRP189) (PHE214) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |Unnamed hypothetical protein |Bacillus stearothermophilus [TaxId: 1422]
d1ep5a_ : (LEU165) (THR188) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d1gjma_ : (ASP52) (TYR78) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
d2fgza1 : (ASP178) (LYS195) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Pullulanase PulA |Klebsiella pneumoniae [TaxId: 573]
d1p97a_ : (LYS6) (GLY30) [view usage] : d.110.3.7 |Profilin-like |PYP-like sensor domain (PAS domain) |Hypoxia-inducible factor Hif2a, C-terminal domain |Hypoxia-inducible factor Hif2a, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3kx3b_ : (ILE39) (ASP63) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d3snga_ : (GLY252) (GLY291) [view usage] : a.124.1.0 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d3wspa_ : (ILE39) (ASP63) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1htwa_ : (ILE127) (ALA155) [view usage] : c.37.1.18 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |YjeE-like |Hypothetical protein HI0065 |Haemophilus influenzae [TaxId: 727]
d2cd8a_ : (PRO40) (ASP67) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d2bvla1 : (LEU371) (LEU410) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Toxin B |Clostridium difficile [TaxId: 1496]
d1xafa_ : (LYS3) (ALA38) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein yfiH |Shigella flexneri [TaxId: 623]
d2assc_ : (ILE3006) (LYS3030) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d1dyla_ : (LEU158) (ALA181) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |SFV capsid |Semliki forest virus [TaxId: 11033]
d4a6ta_ : (ASP282) (GLY314) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d1nt4a_ : (LYS186) (TYR218) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Glucose-1-phosphatase |Escherichia coli [TaxId: 562]
d4v19p_ : (GLY272) (TYR294) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1i5ea_ : (LYS96) (GLU124) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Uracil PRTase, Upp |Bacillus caldolyticus [TaxId: 1394]
d2pq5a_ : (HIS45) (ASP63) [view usage] : c.45.1.0 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pkva_ : (GLY8) (ASP34) [view usage] : b.43.4.3 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Riboflavin synthase |Riboflavin synthase |Escherichia coli [TaxId: 562]
d4o6za_ : (HIS132) (PHE148) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d4a6tc_ : (ASP282) (GLY314) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Chromobacterium violaceum [TaxId: 536]
d1cksa_ : (LYS4) (LYS30) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs2 |Human (Homo sapiens) [TaxId: 9606]
d1o6xa_ : (GLN36) (VAL59) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d4j4pd1 : (LEU23) (ASN51) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a79a2 : (LYS9) (HIS34) [view usage] : d.75.1.1 |MutS N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |tRNA-intron endonuclease N-terminal domain-like |Tetrameric tRNA splicing endonuclease, N-terminal domain |Methanococcus jannaschii [TaxId: 2190]
d1bega_ : (CYS71) (LEU98) [view usage] : a.134.1.1 |Fungal elicitin |Fungal elicitin |Fungal elicitin |beta-cryptogein |Phytophthora cryptogea [TaxId: 4786]
d2c6ha_ : (PRO40) (ASP67) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d2zbza_ : (PRO39) (ASP66) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces griseolus [TaxId: 1909]
d1e6vb1 : (VAL282) (ARG323) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanopyrus kandleri [TaxId: 2320]
d3ld6b_ : (VAL95) (SER120) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q7ja2 : (GLY230) (ILE247) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 273075]
d1txka1 : (ASN399) (LEU439) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain |Escherichia coli [TaxId: 562]
d4p8qa1 : (PHE274) (PHE303) [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1buhb_ : (GLN5) (VAL32) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, a.104, d.58, i.1, c.68, c.108, b.47, d.92, c.45, i.6, c.37, d.194, c.60, b.1, d.110, c.61, b.43,
a.124, b.98, a.89, d.97, a.134, b.57, d.75