Tableau information
Concept source: d1u1zb_ amino acid (a.a.) range (ASP21)(PHE50)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP21) (GLU25) E1
(LYS31) (ILE41) E2
(PHE45) (PHE50) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 152.7° E2
H3 99.7° -74.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vzva_ : (ILE62) (ALA90) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |VZV protease |Varicella-Zoster virus [TaxId: 10335]
d1miqb_ : (MET30) (LYS55) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d1cd3f_ : (SER40) (GLY78) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d1nqla4 : (VAL583) (PRO613) [view usage] : g.3.9.1 |Knottins (small inhibitors, toxins, lectins) |Growth factor receptor domain |Growth factor receptor domain |EGF receptor Cys-rich domains |Human (Homo sapiens) [TaxId: 9606]
d3lnea1 : (ILE7) (GLU31) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d1ojga_ : (GLN144) (ASP178) [view usage] : d.110.6.1 |Profilin-like |Sensory domain-like |Sensory domain of two-component sensor kinase |Fumarate sensor DcuS |Escherichia coli [TaxId: 562]
d3e7ga_ : (VAL308) (LEU327) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ak4b_ : (VAL6) (PRO30) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d1g8ka2 : (ALA14) (ASN71) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1kohb_ : (LEU349) (PRO367) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1tqqa_ : (LEU39) (GLY147) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Integral outer membrane protein TolC, efflux pump component |Escherichia coli [TaxId: 562]
d1qcna1 : (ILE32) (GLY52) [view usage] : b.34.8.1 |SH3-like barrel |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Fumarylacetoacetate hydrolase, FAH, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4pfya_ : (GLU193) (GLY215) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d4nosa_ : (VAL308) (LEU327) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Human (Homo sapiens) [TaxId: 9606]
d1t06a_ : (VAL199) (GLY224) [view usage] : a.118.1.17 |alpha-alpha superhelix |ARM repeat |BC3264-like |Hypothetical protein BC3264 |Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]
d1ee3p_ : (ARG130) (TYR165) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d1p30a2 : (LYS719) (ASN754) [view usage] : b.121.2.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Adenovirus hexon |Adenovirus hexon |Human adenovirus type 5 [TaxId: 28285]
d3vyra_ : (GLY39) (GLU73) [view usage] : b.40.14.1 |OB-fold |HupF/HypC-like |HupF/HypC-like |Hydrogenase expression/formation protein HypC |Thermococcus kodakaraensis [TaxId: 311400]
d1hj4a1 : (TYR100) (LEU129) [view usage] : a.3.1.2 |Cytochrome c |Cytochrome c |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |Paracoccus pantotrophus [TaxId: 82367]
d3q5va_ : (ILE91) (ASN117) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
d1w36b3 : (GLY1137) (GLY1174) [view usage] : c.52.1.24 |Restriction endonuclease-like |Restriction endonuclease-like |Exodeoxyribonuclease V beta chain (RecB), C-terminal domain |Exodeoxyribonuclease V beta chain (RecB), C-terminal domain |Escherichia coli [TaxId: 562]
d1k9ya_ : (GLU154) (PHE194) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |3';5'-adenosine bisphosphatase, PAP phosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2x6ca2 : (PRO206) (TYR225) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d2o1qa1 : (PRO119) (TRP142) [view usage] : b.82.1.21 |Double-stranded beta-helix |RmlC-like cupins |Acetylacetone-cleaving enzyme-like |Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 |Rubrivivax gelatinosus [TaxId: 28068]
d1wdaa3 : (LEU476) (GLY508) [view usage] : d.126.1.5 |Pentein, beta/alpha-propeller |Pentein |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Peptidylarginine deiminase Pad4, catalytic C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1aora2 : (GLY6) (TRP31) [view usage] : d.152.1.1 |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d1s1il_ : (LEU115) (ASP144) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2h2ua_ : (PRO25) (ALA49) [view usage] : b.67.3.1 |5-bladed beta-propeller |Apyrase |Apyrase |Soluble calcium-activated nucleotidase SCAN-1 |Human (Homo sapiens) [TaxId: 9606]
d1v1pb1 : (VAL55) (TYR76) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Exotoxin 1 (SET1, Superantigen-like protein 7) |Staphylococcus aureus [TaxId: 1280]
d3e7gc_ : (VAL308) (LEU327) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3byqa1 : (ARG7) (ARG44) [view usage] : d.79.9.1 |Bacillus chorismate mutase-like |BB2672-like |BB2672-like |Uncharacterized protein BB2672 |Bordetella bronchiseptica [TaxId: 518]
d3fhma_ : (HIS105) (ILE128) [view usage] : d.37.1.0 |CBS-domain pair |CBS-domain pair |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2wlia2 : (SER203) (THR228) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d2b1xb1 : (PRO554) (THR590) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |Naphthalene 1,2-dioxygenase beta subunit |Rhodococcus sp. ncimb12038 [TaxId: 92694]
d1ou9b_ : (LEU90) (ASN113) [view usage] : b.136.1.1 |SspB-like |SspB-like |Stringent starvation protein B, SspB |Stringent starvation protein B, SspB |Haemophilus influenzae [TaxId: 727]
d1nsia_ : (VAL308) (LEU327) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Human (Homo sapiens) [TaxId: 9606]
d4fu0a2 : (PHE225) (THR255) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d3os4a2 : (ILE355) (ALA393) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1mzaa_ : (HIS210) (HIS246) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme K |Human (Homo sapiens) [TaxId: 9606]
d1qnna2 : (ALA142) (GLN168) [view usage] : d.44.1.1 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Cambialistic superoxide dismutase |Porphyromonas gingivalis [TaxId: 837]
d1knba_ : (ASP418) (ILE448) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 5 [TaxId: 28285]
d1b25a2 : (GLY6) (LYS30) [view usage] : d.152.1.1 |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Aldehyde ferredoxin oxidoreductase, N-terminal domain |Formaldehyde ferredoxin oxidoreductase |Pyrococcus furiosus [TaxId: 2261]
d1arla_ : (ARG130) (TYR165) [view usage] : c.56.5.1 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Pancreatic carboxypeptidases |Carboxypeptidase A |Cow (Bos taurus) [TaxId: 9913]
d2wmza_ : (LEU39) (GLY147) [view usage] : f.5.1.1 |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |Outer membrane efflux proteins (OEP) |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1j3ma_ : (CYS78) (ARG101) [view usage] : d.129.7.1 |TBP-like |TT1751-like |TT1751-like |Hypothetical protein TT1751 (TTHA1732) |Thermus thermophilus HB8 [TaxId: 300852]
d3o26a_ : (ASN98) (GLY119) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Papaver somniferum [TaxId: 3469]
d1vr5b_ : (GLU193) (GLY215) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1fmd3_ : (TYR63) (SER87) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Aphthovirus (Foot-and-mouth disease virus) coat proteins |FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
d2qfyb_ : (ILE113) (ALA142) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1u0nd_ : (TRP230) (GLN247) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d1mjta_ : (ILE161) (LYS180) [view usage] : d.174.1.1 |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Nitric oxide (NO) synthase oxygenase domain |Staphylococcus aureus [TaxId: 1280]
d2gu0a1 : (PHE7) (CYS32) [view usage] : d.216.1.0 |Rotavirus NSP2 fragment, N-terminal domain |Rotavirus NSP2 fragment, N-terminal domain |automated matches |automated matches |Rotavirus c [TaxId: 10943]
d1vr5a1 : (GLU193) (GLY215) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1g8jc2 : (ALA14) (ASN71) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1agja_ : (VAL207) (GLU239) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Epidermolytic (exfoliative) toxin A |Staphylococcus aureus [TaxId: 1280]
d1vava_ : (GLY168) (GLN190) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Alginate lyase PA1167 |Pseudomonas aeruginosa [TaxId: 287]
d1irud_ : (ILE206) (GLN244) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome alpha subunit (non-catalytic) |Cow (Bos taurus) [TaxId: 9913]
d1zszc1 : (LEU90) (ASN113) [view usage] : b.136.1.1 |SspB-like |SspB-like |Stringent starvation protein B, SspB |Stringent starvation protein B, SspB |Haemophilus influenzae [TaxId: 727]
d1aoqa1 : (TYR100) (LEU129) [view usage] : a.3.1.2 |Cytochrome c |Cytochrome c |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |Paracoccus pantotrophus [TaxId: 82367]
d2l2ga_ : (GLY1553) (GLY1580) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |automated matches |Monodelphis domestica [TaxId: 13616]
d1ntha_ : (GLY74) (VAL98) [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
d2o72a1 : (PRO5) (GLU31) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Human (Homo sapiens) [TaxId: 9606]
d1hwgc2 : (LEU137) (LYS167) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Growth hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d3pmpa_ : (ASN3) (PRO28) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Moniliophthora perniciosa [TaxId: 153609]
d3bala_ : (PRO122) (LYS149) [view usage] : b.82.1.21 |Double-stranded beta-helix |RmlC-like cupins |Acetylacetone-cleaving enzyme-like |automated matches |Acinetobacter johnsonii [TaxId: 40214]
d4dxya_ : (GLU303) (ASN338) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 279238]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, b.82, c.81, c.94, a.104, c.2, i.1, a.118, b.29, b.67, b.47, c.56, c.77, b.50, d.129, b.40, d.153, b.121, d.174,
e.7, b.1, d.126, d.110, d.17, d.38, d.37, b.62, b.21, d.79, d.142, c.52, b.34, b.136, d.44, a.3, g.3, b.64, f.5, b.57,
d.152, d.216