Tableau information
Concept source: d2fswb_ amino acid (a.a.) range (LYS67)(LEU104)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS67) (GLU73) E1
(ARG77) (LEU82) E2
(THR83) (LEU104) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 166.1° E2
H3 -106.1° -78.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cmna_ : (ASP154) (LEU175) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d1c8pa_ : (GLN3) (GLU30) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d3qr3a_ : (GLU305) (CYS323) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Hypocrea jecorina [TaxId: 51453]
d2g0ja_ : (ASP52) (ASP79) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d2g0jd_ : (SER56) (ASP79) [view usage] : d.64.2.1 |eIF1-like |TM1457-like |TM1457-like |Hypothetical protein Smu.848 |Streptococcus mutans [TaxId: 1309]
d1huuc_ : (PHE47) (VAL89) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d2fh6a1 : (ASP178) (LYS195) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Pullulanase PulA |Klebsiella pneumoniae [TaxId: 573]
d1uf3c_ : (GLY115) (LEU146) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Hypothetical protein TT1561 |Thermus thermophilus [TaxId: 274]
d3t50b_ : (MET32) (THR57) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d1z52a1 : (LEU9) (VAL34) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Aeromonas hydrophila [TaxId: 644]
d4hqaa_ : (LYS28) (CYS52) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fcca_ : (LYS100) (LYS131) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d2pr6a_ : (VAL25) (THR50) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2ebfx2 : (ASN1047) (LYS1064) [view usage] : c.150.1.2 |EreA/ChaN-like |EreA/ChaN-like |PMT domain-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1sqwa2 : (PHE70) (ALA93) [view usage] : d.17.6.3 |Cystatin-like |Pre-PUA domain |Nip7p homolog, N-terminal domain |Nip7p homolog, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ej7l2 : (LYS81) (GLU109) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
d1t11a2 : (MET1) (LYS37) [view usage] : d.241.2.1 |Ribosome binding domain-like |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Vibrio cholerae [TaxId: 666]
d3r5gb_ : (GLY335) (ALA366) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4cbra_ : (ASP201) (ARG233) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dkma_ : (PRO195) (GLY228) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Escherichia coli [TaxId: 562]
d4dj4a_ : (GLY252) (PHE290) [view usage] : a.124.1.0 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d1rlcl2 : (LYS81) (GLU109) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
d3r5ga_ : (GLY335) (ALA366) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1p9ya_ : (MET1) (VAL39) [view usage] : d.241.2.1 |Ribosome binding domain-like |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Escherichia coli [TaxId: 562]
d1lt0a_ : (ALA155) (LEU175) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1riic_ : (ASP121) (ARG159) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d2fh8a1 : (ASP178) (LYS195) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Pullulanase PulA |Klebsiella pneumoniae [TaxId: 573]
d1k8ba_ : (GLU39) (ASP62) [view usage] : d.241.1.1 |Ribosome binding domain-like |Translation initiation factor 2 beta, aIF2beta, N-terminal domain |Translation initiation factor 2 beta, aIF2beta, N-terminal domain |Translation initiation factor 2 beta, aIF2beta, N-terminal domain |Methanococcus jannaschii [TaxId: 2190]
d1x0gb_ : (LEU77) (GLN99) [view usage] : b.124.1.0 |HesB-like domain |HesB-like domain |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d4ruba2 : (LYS81) (GLU109) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
d1prea1 : (LEU9) (VAL34) [view usage] : d.169.1.2 |C-type lectin-like |C-type lectin-like |Aerolysin/Pertussis toxin (APT) domain |Proaerolysin, N-terminal domain |Aeromonas hydrophila [TaxId: 644]
d3zxwa1 : (LYS81) (GLU109) [view usage] : d.58.9.0 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d3wwoa_ : (ASP130) (SER159) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Baliospermum montanum [TaxId: 316758]
d3wh9a_ : (GLN307) (ALA345) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Aspergillus niger [TaxId: 5061]
d1t5ya2 : (PHE70) (ALA93) [view usage] : d.17.6.3 |Cystatin-like |Pre-PUA domain |Nip7p homolog, N-terminal domain |Nip7p homolog, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2qtva4 : (THR652) (GLY677) [view usage] : d.109.2.1 |Gelsolin-like |C-terminal, gelsolin-like domain of Sec23/24 |C-terminal, gelsolin-like domain of Sec23/24 |Sec23 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1odva_ : (GLY29) (THR50) [view usage] : d.110.3.1 |Profilin-like |PYP-like sensor domain (PAS domain) |PYP-like |Photoactive yellow protein, PYP |Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
d3a12a1 : (SER71) (GLU97) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Thermococcus kodakaraensis [TaxId: 311400]
d1g03a_ : (VAL2) (ALA31) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HTLV-I capsid protein |Human T-cell leukemia virus type 1 [TaxId: 11908]
d2bh7a2 : (GLU106) (TYR141) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain |Escherichia coli [TaxId: 562]
d1bxna2 : (ARG84) (GLU112) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Alcaligenes eutrophus [TaxId: 106590]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.159, d.58, d.169, c.60, b.1, e.23, d.110, d.17, d.118, a.4, d.109, a.55, a.73, a.124, d.64, c.150, b.124,
d.241