Tableau information
Concept source: d2deba1 amino acid (a.a.) range (VAL483)(PHE516)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL483) (ALA493) E1
(ARG498) (ARG503) E2
(SER506) (PHE516) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 148.7° E2
H3 138.5° -39.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1jawa1 : (ASN155) (LEU174) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Escherichia coli [TaxId: 562]
d1clea_ : (LEU502) (PRO529) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d3su4a_ : (LYS1155) (ARG1180) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1u34a_ : (ALA99) (ILE121) [view usage] : g.76.1.1 |Hormone receptor domain |Hormone receptor domain |Hormone receptor domain |Corticotropin releasing factor receptor 2, CRFR-2beta |Mouse (Mus musculus) [TaxId: 10090]
d3d5by1 : (GLY41) (ARG73) [view usage] : b.34.5.1 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal proteins L24p and L21e |Ribosomal proteins L24 (L24p) |Thermus thermophilus [TaxId: 274]
d1llfa_ : (MET503) (PRO529) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d1ty0a1 : (ASP31) (LYS47) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal pyrogenic exotoxin Spe-J |Streptococcus pyogenes [TaxId: 1314]
d3ouqa1 : (VAL6) (TYR27) [view usage] : a.138.1.0 |Multiheme cytochromes |Multiheme cytochromes |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1ki9b_ : (SER93) (LEU113) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus thermolithotrophicus [TaxId: 2186]
d4hasb_ : (VAL172) (GLU219) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f8wa3 : (GLN324) (LEU349) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |NADH peroxidase |Enterococcus faecalis [TaxId: 1351]
d3u5cc_ : (LYS157) (GLY192) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3kica_ : (ASN540) (THR569) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |automated matches |Adeno-associated virus 3b [TaxId: 68742]
d1pkpa1 : (GLU84) (GLY119) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Ribosomal protein S5, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1crla_ : (MET503) (LEU525) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Fungus (Candida rugosa), formerly Cylindracea [TaxId: 5481]
d4fiua1 : (SER111) (GLY128) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d4v19s_ : (ILE90) (LEU116) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1gk2a_ : (VAL404) (ARG452) [view usage] : a.127.1.2 |L-aspartase-like |L-aspartase-like |HAL/PAL-like |Histidine ammonia-lyase (HAL) |Pseudomonas putida [TaxId: 303]
d1fjge1 : (GLU79) (GLY114) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Ribosomal protein S5, C-terminal domain |Thermus thermophilus [TaxId: 274]
d2e9fc_ : (ALA277) (ALA297) [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3gc8b_ : (GLY7) (CYS39) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gz7a_ : (MET503) (SER527) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida rugosa, lipase 2 isoform [TaxId: 5481]
d4hasa_ : (PRO177) (ALA221) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g4wr2 : (GLY392) (GLN411) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |SptP tyrosine phosphatase, catalytic domain |Salmonella typhimurium [TaxId: 90371]
d2ljza_ : (PHE125) (SER142) [view usage] : g.90.1.1 |E6 C-terminal domain-like |E6 C-terminal domain-like |E6 C-terminal domain-like |automated matches |Human papillomavirus [TaxId: 333760]
d4a17m_ : (TYR183) (GLY206) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2i2to1 : (HIS34) (LEU62) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein L18 (L18p) |Escherichia coli [TaxId: 562]
d2w99b_ : (VAL71) (ALA107) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z24a1 : (LYS54) (THR83) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Insecticyanin |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d2z1aa2 : (PRO155) (GLU178) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Thermus thermophilus [TaxId: 274]
d2wu9a2 : (ARG418) (ARG446) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1m35a1 : (ASN155) (LEU174) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Escherichia coli [TaxId: 562]
d4f8xa_ : (GLY309) (GLY354) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Penicillium canescens [TaxId: 5083]
d1y4zb1 : (GLY65) (ILE88) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Respiratory nitrate reductase 1 beta chain |Escherichia coli [TaxId: 562]
d3o9ma_ : (GLN498) (MET532) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4juea_ : (GLY55) (GLY90) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Plasmodium falciparum [TaxId: 36329]
d1gk3a_ : (VAL404) (ARG452) [view usage] : a.127.1.2 |L-aspartase-like |L-aspartase-like |HAL/PAL-like |Histidine ammonia-lyase (HAL) |Pseudomonas putida [TaxId: 303]
d4jk8b_ : (ASN1804) (LEU1833) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d2h4ta1 : (ALA484) (PHE516) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1kn3a_ : (GLY108) (HIS159) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |Phosphatidylethanolamine binding protein, PEBP |Mouse (Mus musculus), PEBP-2 [TaxId: 10090]
d3pnka_ : (PHE204) (VAL244) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1khtb_ : (SER93) (LEU113) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus voltae [TaxId: 2188]
d1d9ua_ : (LYS51) (GLY82) [view usage] : d.2.1.4 |Lysozyme-like |Lysozyme-like |Lambda lysozyme |Lambda lysozyme |Bacteriophage lambda [TaxId: 10710]
d4hwra1 : (ILE466) (SER494) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2exra1 : (ALA102) (HIS119) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1nksa_ : (ALA94) (ILE114) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Sulfolobus acidocaldarius [TaxId: 2285]
d2bspa_ : (LYS54) (LYS79) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Pectate lyase |Bacillus subtilis [TaxId: 1423]
d1e3qa_ : (GLN500) (THR535) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Acetylcholinesterase |Pacific electric ray (Torpedo californica) [TaxId: 7787]
d2cyja1 : (HIS20) (HIS42) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein PH1505 |Pyrococcus horikoshii [TaxId: 53953]
d4jkab_ : (ASN1804) (LEU1833) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d4nwla_ : (ARG155) (ARG180) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d2iqqa1 : (ASN123) (LYS158) [view usage] : d.81.2.1 |FwdE/GAPDH domain-like |Serine metabolism enzymes domain |Serine dehydratase beta chain-like |L-serine dehydratase SdhL, N-terminal domain |Legionella pneumophila [TaxId: 446]
d3n5id_ : (GLU344) (ARG369) [view usage] : d.154.1.0 |DmpA/ArgJ-like |DmpA/ArgJ-like |automated matches |automated matches |Sphingosinicella xenopeptidilytica [TaxId: 364098]
d2iqya_ : (GLY108) (HIS159) [view usage] : b.17.1.1 |PEBP-like |PEBP-like |Phosphatidylethanolamine binding protein |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ebda3 : (ALA347) (GLY372) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |Dihydrolipoamide dehydrogenase |Bacillus stearothermophilus [TaxId: 1422]
d1ki9a_ : (SER93) (LEU113) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus thermolithotrophicus [TaxId: 2186]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, b.19, c.69, d.159, d.58, i.1, b.47, c.45, a.127, d.144, b.40, c.37, d.104, c.55, d.2, c.95, b.60, d.14, b.121,
d.81, d.20, c.43, d.87, b.34, d.145, a.138, b.17, c.119, c.103, g.76, d.189, g.90, d.154