Tableau information
Concept source: d1o1ua_ amino acid (a.a.) range (GLY4)(GLY22)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY4) (MET8) E1
(GLU9) (ASN13) E2
(GLU16) (GLY22) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -55.1° E2
H3 -89.6° 65.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4c6ua1 : (PRO12) (GLY39) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4i3bf_ : (GLY7) (GLY25) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Eel (Anguilla japonica) [TaxId: 7937]
d1fj4a1 : (LYS2) (GLY29) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase I |Escherichia coli [TaxId: 562]
d1h4fa1 : (MET1) (GLU28) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase I |Escherichia coli [TaxId: 562]
d1xida_ : (MET1) (TRP20) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d4ewga1 : (SER0) (ALA28) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d1rh9a1 : (LYS45) (TYR62) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-mannanase |Tomato (Lycopersicon esculentum) [TaxId: 4081]
d3skje_ : (GLU68) (PRO85) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jrhb1 : (LYS3) (GLY31) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1crba_ : (GLY6) (ALA22) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1w0ia1 : (ARG31) (GLY58) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
d2vzoa1 : (GLY49) (SER66) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d1psaa_ : (GLN99) (ALA115) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin(ogen) |Pig (Sus scrofa) [TaxId: 9823]
d1uuqa_ : (LYS37) (ALA54) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exomannosidase |Cellvibrio mixtus [TaxId: 39650]
d3c2wa1 : (LEU182) (PRO196) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Pseudomonas aeruginosa [TaxId: 287]
d1soza2 : (GLY226) (GLY252) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Stress sensor protease DegS, catalytic domain |Escherichia coli [TaxId: 562]
d1j1ta_ : (TYR180) (GLY215) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Alginate lyase |Alteromonas sp. [TaxId: 232]
d3oyta1 : (MSE1) (GLU28) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d1twye_ : (LEU95) (GLY129) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ABC transporter, periplasmic substrate-binding protein VCA0807 |Vibrio cholerae [TaxId: 666]
d3stna_ : (GLY5) (GLY23) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d3e60a1 : (ARG2) (GLY29) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d2qiea_ : (VAL42) (PRO72) [view usage] : d.41.5.0 |alpha/beta-Hammerhead |Molybdopterin synthase subunit MoaE |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4efga_ : (GLY6) (ASP24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r89a3 : (LYS336) (SER360) [view usage] : d.58.16.2 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Archaeal tRNA CCA-adding enzyme |tRNA nucleotidyltransferase, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1s5ad_ : (VAL111) (GLY136) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Hypothetical protein YesE |Bacillus subtilis [TaxId: 1423]
d1sura_ : (GLN149) (GLY197) [view usage] : c.26.2.2 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |PAPS reductase-like |Phosphoadenylyl sulphate (PAPS) reductase |Escherichia coli [TaxId: 562]
d2k2na1 : (LEU74) (PRO88) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Sensor protein CYB2465 |Synechococcus sp. [TaxId: 1131]
d2ffia1 : (THR13) (LEU28) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 |Pseudomonas putida [TaxId: 303]
d1xiba_ : (MET1) (TRP20) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d1oxha1 : (LYS2) (THR30) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1r9la_ : (PHE82) (TYR106) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glycine betaine-binding periplasmic protein ProX |Escherichia coli [TaxId: 562]
d1maca_ : (SER2) (ASN38) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Bacillus macerans [TaxId: 44252]
d3oidb_ : (GLY81) (ALA114) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4reqa1 : (GLU473) (GLU502) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1ab0a_ : (GLY6) (GLY24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Adipocyte lipid-binding protein, ALBP |Mouse (Mus musculus) [TaxId: 10090]
d3mqda1 : (ARG2) (GLU28) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2rcqa_ : (GLY6) (ASP24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kr5b_ : (TYR343) (GLY367) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d1hmra_ : (GLY6) (GLY24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Muscle fatty acid binding protein (m-fabp) |Human (Homo sapiens) [TaxId: 9606]
d2iwya1 : (ARG42) (GLY69) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dd8a1 : (MET1) (GLU28) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase I |Escherichia coli [TaxId: 562]
d2rjta1 : (LYS2) (GLY31) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2q15a_ : (ALA368) (TYR384) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d4i9ra_ : (ASN6) (GLY23) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d4ewgb1 : (MET1) (ALA28) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
d1s5ab_ : (VAL111) (PHE135) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Hypothetical protein YesE |Bacillus subtilis [TaxId: 1423]
d3grwa2 : (ARG248) (GLN263) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2f73c_ : (GLY5) (GLY23) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1vica_ : (ALA181) (TRP202) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase |Haemophilus influenzae [TaxId: 727]
d2ogab_ : (THR7) (LEU22) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d2gp6a1 : (PRO11) (ARG38) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3kd6b_ : (ASN92) (PHE107) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d2fnca_ : (ALA109) (GLU141) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1eyra_ : (GLN170) (ALA188) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Neisseria meningitidis [TaxId: 487]
d4ls6b1 : (THR1) (GLY30) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2x05a1 : (GLY49) (SER66) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |Exochitosanase CsxA |Amycolatopsis orientalis [TaxId: 31958]
d3kzua1 : (ARG2) (GLY29) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d1ssha_ : (LEU31) (GLU58) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3kd6a_ : (ASN92) (PHE107) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d3nx1b_ : (GLU130) (LEU167) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Enterobacter sp. [TaxId: 418698]
d1ggla_ : (GLY6) (ASN24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein III |Human (Homo sapiens) [TaxId: 9606]
d4azra_ : (GLY9) (GLY27) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ls5a1 : (THR1) (GLY30) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2gfva1 : (LYS2) (GLY30) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Escherichia coli [TaxId: 562]
d2hrua2 : (LYS352) (ASP374) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d1olra_ : (GLY168) (GLY189) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Humicola grisea [TaxId: 5527]
d1gs0a2 : (TYR373) (PHE392) [view usage] : d.166.1.2 |ADP-ribosylation |ADP-ribosylation |Poly(ADP-ribose) polymerase, C-terminal domain |Poly(ADP-ribose) polymerase, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1xhsa_ : (ALA88) (LYS113) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein YtfP |Escherichia coli [TaxId: 562]
d2ogaa_ : (THR7) (LEU22) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces venezuelae [TaxId: 54571]
d4r8ea1 : (LYS2) (GLY30) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d3hnza1 : (LYS2) (GLY30) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4ruua_ : (THR7) (ASP24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3l0ra_ : (MET52) (VAL78) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Soft tick (Ornithodoros moubata) [TaxId: 6938]
d3azra_ : (HIS164) (HIS205) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1yfra2 : (VAL207) (GLY231) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Alanyl-tRNA synthetase (AlaRS) |Aquifex aeolicus [TaxId: 63363]
d2ffib_ : (THR13) (LEU28) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 |Pseudomonas putida [TaxId: 303]
d1p3ca_ : (GLY75) (THR91) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Glutamyl endopeptidase |Bacillus intermedius [TaxId: 1400]
d1bm5a_ : (GLY5) (LEU22) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d2iwyb1 : (ARG42) (GLY69) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1blra_ : (GLY5) (GLY23) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinoic-acid-binding protein (CRABP) |Human (Homo sapiens), CRABP-II [TaxId: 9606]
d3t4md_ : (MET126) (ILE154) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
d1tqya1 : (ARG3) (GLY30) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA |Streptomyces coelicolor [TaxId: 1902]
d2q9ta_ : (GLY82) (GLY119) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 294]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, c.2, d.58, c.68, b.29, c.26, b.47, b.50, c.72, d.104, d.166, c.95, b.60, b.18, b.1, d.110, b.96, d.17,
d.79, d.41, b.34, d.269