Tableau information
Concept source: d1kn0a_ amino acid (a.a.) range (TYR51)(PHE79)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR51) (MET56) E1
(GLN61) (ILE66) E2
(GLY68) (PHE79) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.9° E2
H3 -157.7° 35.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cmna_ : (HIS235) (LEU269) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |automated matches |Bradyrhizobium japonicum [TaxId: 375]
d2fz2a_ : (PRO26) (THR64) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d4oltb_ : (GLY36) (SER71) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |automated matches |Pseudomonas sp. [TaxId: 878476]
d2ykna1 : (PRO55) (THR84) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d1lsva_ : (HIS235) (GLN270) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d3tmqa_ : (LEU202) (VAL219) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d3pl1a_ : (ALA92) (GLY124) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2ykma1 : (PRO55) (THR84) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
d2d6fa2 : (VAL231) (ARG264) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1drma_ : (HIS235) (GLU268) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1qx5r_ : (ALA128) (THR146) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ik1b_ : (THR1) (ILE32) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ywya1 : (ARG51) (GLY84) [view usage] : b.55.2.1 |PH domain-like barrel |PA2021-like |PA2021-like |Hypothetical protein PA2021 |Pseudomonas aeruginosa [TaxId: 287]
d4q0ma_ : (VAL138) (GLU164) [view usage] : c.88.1.0 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1e9gb_ : (THR1) (ILE32) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1zq1a2 : (VAL233) (ARG266) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD |Pyrococcus abyssi [TaxId: 29292]
d1dp6a_ : (HIS235) (GLU268) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1n2db_ : (VAL129) (LEU147) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Light Chain Mlc1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4jlya_ : (GLY138) (LEU169) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d1wlsa_ : (ILE138) (GLU164) [view usage] : c.88.1.0 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1lt0a_ : (HIS235) (LEU269) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Histidine kinase FixL heme domain |Bradyrhizobium japonicum [TaxId: 375]
d1lrza2 : (TYR113) (GLY139) [view usage] : d.108.1.4 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |FemXAB nonribosomal peptidyltransferases |Methicillin resistance protein FemA |Staphylococcus aureus [TaxId: 1280]
d1vb3a1 : (ALA81) (GLY123) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Escherichia coli [TaxId: 562]
d1bqmb_ : (TYR56) (ARG83) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1sjwa_ : (ARG100) (GLY133) [view usage] : d.17.4.9 |Cystatin-like |NTF2-like |SnoaL-like polyketide cyclase |Nogalonic acid methyl ester cyclase SnoaL |Streptomyces nogalater [TaxId: 38314]
d4qyxa_ : (LYS4) (GLY42) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1e1da_ : (LYS338) (CYS361) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d4lrua_ : (VAL2) (GLY40) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |automated matches |Candida albicans [TaxId: 237561]
d2d74b1 : (GLY34) (ASN57) [view usage] : d.241.1.0 |Ribosome binding domain-like |Translation initiation factor 2 beta, aIF2beta, N-terminal domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d4aeca_ : (THR124) (SER160) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1gnta_ : (LYS338) (CYS361) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d4jlza1 : (PRO333) (HIS367) [view usage] : d.218.1.15 |Nucleotidyltransferase |Nucleotidyltransferase |cGAMP synthase, cGAS N-terminal domain |cGAMP synthase, cGAS N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1g1ka_ : (SER3) (LYS32) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cohesin domain |Clostridium thermocellum, cellulosome, various modules [TaxId: 1515]
d1auoa_ : (TYR68) (THR101) [view usage] : c.69.1.14 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase/thioesterase 1 |Carboxylesterase |Pseudomonas fluorescens [TaxId: 294]
d1ooaa2 : (SER208) (ASN247) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1yppa_ : (THR1) (ILE32) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3mtsc_ : (GLU46) (LYS81) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e6ab_ : (THR1001) (ILE1032) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2d6fb2 : (VAL231) (ARG264) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.69, c.79, c.23, b.40, d.2, b.121, b.2, d.108, d.110, d.17, c.33, b.55, b.34, a.39, e.26, c.88, d.218, d.50,
d.241