Tableau information
Concept source: d1m9na2 amino acid (a.a.) range (PRO228)(ALA244)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO228) (ASN233) E1
(GLY234) (PHE238) E2
(PHE238) (ALA244) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 128.7° E2
H3 124.3° -85.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3tqmb_ : (HIS2) (ILE27) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d1l4za_ : (GLY549) (GLN576) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Plasmin(ogen), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3tyzb_ : (GLY59) (ARG77) [view usage] : c.1.21.1 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Dihydropteroate synthetase |automated matches |Yersinia pestis [TaxId: 632]
d1ft2b_ : (GLY189) (ASN215) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3rdka_ : (ASN94) (GLY127) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d3tqma_ : (HIS2) (ILE27) [view usage] : d.204.1.0 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d1ue0a_ : (PHE302) (TYR335) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d3mwma_ : (HIS84) (GLY116) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1q7qa1 : (GLY432) (ASP465) [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1k5dc_ : (ALA2) (VAL24) [view usage] : c.10.1.2 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |Rna1p (RanGAP1), N-terminal domain |Rna1p (RanGAP1), N-terminal domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2l38a_ : (SER112) (ASN138) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Sticholysin II |Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]
d3pc7a_ : (THR889) (ARG916) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q25a2 : (SER155) (CYS190) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Cow (Bos taurus) [TaxId: 9913]
d2h1bc_ : (SER40) (LYS63) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d1kf6c_ : (ASN95) (ALA127) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Fumarate reductase subunit FrdC |Escherichia coli [TaxId: 562]
d1d8db_ : (GLY189) (ASN215) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3tyza_ : (GLY59) (ARG77) [view usage] : c.1.21.1 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Dihydropteroate synthetase |automated matches |Yersinia pestis [TaxId: 632]
d1pxza_ : (ASP39) (ARG64) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Major pollen allergen Jun a 1 |Ozark white cedar (Juniperus ashei) [TaxId: 13101]
d3dina1 : (VAL358) (GLU386) [view usage] : a.162.1.1 |Pre-protein crosslinking domain of SecA |Pre-protein crosslinking domain of SecA |Pre-protein crosslinking domain of SecA |Pre-protein crosslinking domain of SecA |Thermotoga maritima MSB8 [TaxId: 243274]
d2bgka1 : (ALA201) (ALA224) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Rhizome secoisolariciresinol dehydrogenase |Mayapple (Podophyllum peltatum) [TaxId: 35933]
d1t9qa_ : (LYS2) (GLU50) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d1bvua1 : (GLY246) (GLY267) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Thermococcus litoralis [TaxId: 2265]
d1e4gt1 : (GLU89) (GLY126) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Cell division protein FtsA |Thermotoga maritima [TaxId: 2336]
d2k1wa_ : (TYR58) (GLY73) [view usage] : b.11.1.0 |gamma-Crystallin-like |gamma-Crystallin-like |automated matches |automated matches |Methanosarcina acetivorans [TaxId: 2214]
d4o9ga_ : (ALA6) (PRO30) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1ffya2 : (SER307) (GLU342) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Staphylococcus aureus [TaxId: 1280]
d3j38i_ : (GLY171) (SER206) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d2o03a_ : (HIS80) (ALA105) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4f32a2 : (ILE264) (MET293) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia vietnamiensis [TaxId: 269482]
d1oysa2 : (VAL199) (LEU237) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH, domain 2 |Bacillus subtilis [TaxId: 1423]
d1bq9a_ : (ALA2) (GLU50) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Pyrococcus furiosus [TaxId: 2261]
d1vw4k_ : (GLY75) (ILE97) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1wk8b_ : (PHE302) (TYR335) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d2pa7b_ : (LYS4) (PRO28) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d1m9na2 : (PRO228) (ALA244) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Chicken (Gallus gallus) [TaxId: 9031]
d2dvta1 : (GLY129) (ARG148) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Thermophilic reversible gamma-resorcylate decarboxylase |Rhizobium sp. MTP-10005 [TaxId: 267998]
d1epwa3 : (SER200) (HIS229) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1epwa3 : (LYS328) (LYS365) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype B [TaxId: 1491]
d1s9hb_ : (CYS425) (MET445) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d1n2za_ : (ARG157) (GLY184) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d1n2za_ : (GLY184) (SER208) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d2paka1 : (VAL5) (PRO28) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d2g45a_ : (ASN207) (GLU239) [view usage] : g.44.1.5 |RING/U-box |RING/U-box |Zf-UBP |Ubiquitin carboxyl-terminal hydrolase 5, UBP5 |Human (Homo sapiens) [TaxId: 9606]
d3mwmb_ : (HIS84) (GLY116) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1fi4a1 : (ARG58) (ASP93) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate 5-diphosphate decarboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2g43a1 : (ASN46) (GLU78) [view usage] : g.44.1.5 |RING/U-box |RING/U-box |Zf-UBP |Ubiquitin carboxyl-terminal hydrolase 5, UBP5 |Human (Homo sapiens) [TaxId: 9606]
d1wkpb_ : (ILE26) (GLN49) [view usage] : b.17.1.0 |PEBP-like |PEBP-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1wkpa_ : (ILE26) (GLN49) [view usage] : b.17.1.0 |PEBP-like |PEBP-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1k7ja_ : (LEU141) (ARG163) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein YciO |Escherichia coli [TaxId: 562]
d1ujra_ : (GLU29) (GLY58) [view usage] : d.289.1.1 |WWE domain |WWE domain |WWE domain |RING finger protein 146 (Dactylidin) |Mouse (Mus musculus) [TaxId: 10090]
d2zirb_ : (GLY189) (ASN215) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1k2yx1 : (TYR114) (GLU139) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d1xara_ : (GLY337) (TRP355) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |DC-SIGNR (DC-SIGN related receptor) |Human (Homo sapiens) [TaxId: 9606]
d1t9oa_ : (LYS202) (GLU250) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |Rubredoxin |Clostridium pasteurianum [TaxId: 1501]
d4o9ea_ : (ASN4) (PRO30) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1t8qb_ : (GLU243) (LYS263) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1wk8a_ : (PHE302) (TYR335) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d3m7wa_ : (ASN135) (LEU158) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Salmonella enterica [TaxId: 99287]
d1wnya_ : (PHE302) (TYR335) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |automated matches |Thermus thermophilus [TaxId: 274]
d3bgua_ : (GLY2) (SER28) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Thermobifida fusca [TaxId: 269800]
d2rm5a_ : (PHE18) (SER36) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4kx6c_ : (ASN95) (ALA127) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Fumarate reductase subunit FrdC |Escherichia coli [TaxId: 536056]
d2dy7a1 : (ASN210) (GLN248) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |ATP-dependent helicase CHD1 (Chromo domain protein 1) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2qi9f_ : (ARG157) (GLY184) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d2qi9f_ : (GLY184) (SER208) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.10, b.82, c.2, d.58, i.1, b.47, c.92, a.102, d.92, c.37, c.47, c.55, c.95, d.169, d.14, c.97, f.21, b.34,
a.4, b.11, b.97, b.51, b.17, c.15, d.101, g.41, c.84, g.44, d.289, b.64, d.204, a.162, d.115