Tableau information
Concept source: d1wn7a1 amino acid (a.a.) range (PHE26)(ILE54)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE26) (ARG32) E1
(THR33) (LYS43) E2
(ALA47) (ILE54) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 50.6° E2
H3 -126.0° 134.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wg7a_ : (GLY17) (ARG38) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Dedicator of cytokinesis protein 9, DOCK9 |Human (Homo sapiens) [TaxId: 9606]
d4hatb_ : (ALA169) (LYS199) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1cg4a_ : (GLY352) (LYS366) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1cg4a_ : (GLY367) (PRO392) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1jq5a_ : (GLU4) (LEU27) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Glycerol dehydrogenase |Bacillus stearothermophilus [TaxId: 1422]
d1xtda2 : (GLY124) (GLY149) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1lvoa_ : (LYS101) (SER146) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |Transmissible gastroenteritis virus [TaxId: 11149]
d1xwna1 : (ASP106) (LYS125) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 |Human (Homo sapiens) [TaxId: 9606]
d1cg3a_ : (GLY352) (LYS366) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1cg3a_ : (GLY367) (PRO392) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1t0tv_ : (ALA101) (LEU131) [view usage] : d.58.4.10 |Ferredoxin-like |Dimeric alpha+beta barrel |Chlorite dismutase-like |YwfI homologue |Bacillus stearothermophilus [TaxId: 1422]
d2crua1 : (GLN11) (VAL46) [view usage] : a.5.6.1 |RuvA C-terminal domain-like |Double-stranded DNA-binding domain |Double-stranded DNA-binding domain |Programmed cell death protein 5 |Human (Homo sapiens) [TaxId: 9606]
d3o61d_ : (GLY78) (GLY106) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d1ne9a2 : (PRO313) (LEU332) [view usage] : d.108.1.4 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |FemXAB nonribosomal peptidyltransferases |Peptidyltransferase FemX |Weissella viridescens [TaxId: 1629]
d3izbf_ : (LYS45) (VAL62) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3m1ib_ : (ALA169) (ALA201) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ewba1 : (LEU245) (ALA272) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d4mcaa_ : (ARG3) (ALA29) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Serratia plymuthica [TaxId: 1206776]
d4kysb_ : (ASN377) (GLN403) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Clostridium botulinum [TaxId: 441770]
d2z4fa_ : (LEU94) (PHE114) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mqpa2 : (ARG20) (GLY45) [view usage] : d.92.2.2 |Zincin-like |beta-N-acetylhexosaminidase-like domain |alpha-D-glucuronidase, N-terminal domain |alpha-D-glucuronidase, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1k9da2 : (ARG20) (LYS44) [view usage] : d.92.2.2 |Zincin-like |beta-N-acetylhexosaminidase-like domain |alpha-D-glucuronidase, N-terminal domain |alpha-D-glucuronidase, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d4gptb_ : (ALA169) (LYS199) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4gmxb_ : (ALA169) (LYS200) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mqqa2 : (ARG20) (LYS44) [view usage] : d.92.2.2 |Zincin-like |beta-N-acetylhexosaminidase-like domain |alpha-D-glucuronidase, N-terminal domain |alpha-D-glucuronidase, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d3hq6a2 : (THR231) (ALA256) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1wxua_ : (VAL74) (SER88) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ur0b_ : (GLY154) (THR193) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-1,4-galactanase |Bacillus licheniformis [TaxId: 1402]
d2qcya_ : (ASP155) (THR199) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d3rzuc_ : (GLY327) (THR351) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d1blle2 : (LEU245) (ALA272) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |Leucine aminopeptidase, C-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d3hdpa_ : (MET-3) (GLY24) [view usage] : d.32.1.0 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 1488]
d1zhha_ : (THR334) (PHE360) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Quorum-sensing signal (autoinducer-2) binding protein LuxP |Vibrio harveyi [TaxId: 669]
d2a4wb_ : (SER202) (GLY226) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |automated matches |Streptomyces caespitosus [TaxId: 53502]
d4j9wa_ : (PRO135) (HIS154) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Pseudomonas protegens [TaxId: 220664]
d2hldd2 : (GLY211) (GLY248) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2j9aa1 : (LEU245) (ALA272) [view usage] : c.56.5.3 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Leucine aminopeptidase, C-terminal domain |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2b7jb_ : (GLY171) (SER187) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin-like protein Sco1 (YpmQ), soluble domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mdqa_ : (SER255) (LEU285) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, d.58, i.1, b.47, c.56, d.92, c.93, e.22, b.40, c.37, c.47, c.55, b.18, d.32, d.108, c.97, b.62, d.21, b.55,
b.34, a.3, d.113, a.5