Tableau information
Concept source: d3mkpd1 amino acid (a.a.) range (LYS47)(ASN77)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS47) (LYS52) E1
(LEU57) (LYS63) E2
(ALA67) (ASN77) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -134.4° E2
H3 40.1° 135.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2m38a_ : (GLN17) (GLN52) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gcxa1 : (MET1) (GLY30) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Ferrous iron transport protein A, FeoA |Klebsiella pneumoniae [TaxId: 573]
d1kida_ : (GLY211) (LEU234) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Escherichia coli [TaxId: 562]
d4if6a_ : (HIS471) (GLY494) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ge1d1 : (MSE212) (GLN252) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1ydxa2 : (PRO270) (LEU299) [view usage] : d.287.1.2 |DNA methylase specificity domain |DNA methylase specificity domain |Type I restriction modification DNA specificity domain |Bipartite methylase S protein MG438 |Mycoplasma genitalium [TaxId: 2097]
d4v19y_ : (VAL13) (LYS34) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2ahjd_ : (GLU110) (ARG149) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d2gt3a_ : (THR36) (LEU62) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |automated matches |Escherichia coli [TaxId: 562]
d1woga_ : (ASP26) (VAL63) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Agmatinase |Deinococcus radiodurans [TaxId: 1299]
d3pila_ : (ILE9) (TYR36) [view usage] : d.58.28.0 |Ferredoxin-like |Peptide methionine sulfoxide reductase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3uq8a_ : (GLY229) (GLY251) [view usage] : d.142.2.0 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 71421]
d3hyla1 : (HIS102) (LYS138) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1w66a1 : (LYS79) (GLY121) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |Lipoyltransferase LipB |Mycobacterium tuberculosis [TaxId: 1773]
d2h5fb_ : (CYS57) (ASP77) [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |automated matches |Mangrove snake (Boiga dendrophila) [TaxId: 46286]
d1wd3a2 : (GLY341) (ARG362) [view usage] : b.42.8.1 |beta-Trefoil |AbfB domain |AbfB domain |Alpha-L-arabinofuranosidase B (AbfB), C-terminal domain |Aspergillus kawachii [TaxId: 40384]
d1bg1a2 : (LEU337) (GLN361) [view usage] : b.2.5.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |STAT DNA-binding domain |STAT3b |Mouse (Mus musculus) [TaxId: 10090]
d1ewwa_ : (SER55) (CYS80) [view usage] : b.81.2.1 |Single-stranded left-handed beta-helix |An insect antifreeze protein |An insect antifreeze protein |Thermal hysteresis protein |Spruce budworm (Choristoneura fumiferana), 5-turn isoforms [TaxId: 7141]
d1ytla1 : (TYR144) (LEU174) [view usage] : c.31.1.6 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |ACDE2-like |Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 |Archaeoglobus fulgidus [TaxId: 2234]
d3m49b1 : (HIS102) (LYS138) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d4ovja_ : (PRO303) (LEU341) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Alicyclobacillus acidocaldarius [TaxId: 521098]
d1dela_ : (ALA210) (LEU241) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxynucleoside monophosphate kinase |Bacteriophage T4 [TaxId: 10665]
d1ytlc_ : (TYR144) (LEU174) [view usage] : c.31.1.6 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |ACDE2-like |Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 |Archaeoglobus fulgidus [TaxId: 2234]
d3m49a1 : (HIS102) (LYS138) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d2bjqa1 : (GLY257) (ALA284) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]
d4m4sa2 : (LYS287) (ALA308) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Sulfolobus solfataricus [TaxId: 2287]
d1v9fa_ : (GLU216) (THR244) [view usage] : d.265.1.3 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase RsuA/RluD |Ribosomal large subunit pseudouridine synthase D, RluD |Escherichia coli [TaxId: 562]
d1vqza2 : (GLY73) (GLY113) [view usage] : d.104.1.3 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |LplA-like |LplA-like protein SP1160, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2wqae_ : (ARG121) (CYS160) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Human (Homo sapiens) [TaxId: 9606]
d2ahjb_ : (GLU110) (ARG149) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d2q17e_ : (GLY25) (THR54) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d1aqla_ : (ALA486) (ALA528) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Cow (Bos taurus) [TaxId: 9913]
d2ddze_ : (MET4) (ASN29) [view usage] : d.104.1.4 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |PH0223-like |Uncharacterized protein PH0223 |Pyrococcus horikoshii [TaxId: 53953]
d1i8na_ : (GLY52) (GLU77) [view usage] : g.10.1.2 |Hairpin loop containing domain-like |Hairpin loop containing domain-like |Anti-platelet protein |Anti-platelet protein |Mexican leech (Haementeria officinalis) [TaxId: 6410]
d3wwoa_ : (ALA99) (VAL124) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Baliospermum montanum [TaxId: 316758]
d1oh2q_ : (GLY209) (SER241) [view usage] : f.4.3.2 |Transmembrane beta-barrels |Porins |Maltoporin-like |Sucrose-specific porin |Salmonella typhimurium [TaxId: 90371]
d3a8mb_ : (GLU110) (ARG149) [view usage] : b.34.4.4 |SH3-like barrel |Electron transport accessory proteins |Nitrile hydratase beta chain |Iron-containing nitrile hydratase |Rhodococcus erythropolis [TaxId: 1833]
d1droa_ : (THR15) (ASN56) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |beta-spectrin |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1zy9a1 : (ASP140) (MSE173) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Alpha-galactosidase GalA N-terminal domain |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, b.81, c.94, d.58, i.1, b.30, c.42, f.4, c.37, c.36, d.104, c.55, b.60, d.169, b.2, c.31, b.42, c.8, b.55, d.142,
b.34, d.287, b.43, g.10, d.265, g.7, b.169