Tableau information
Concept source: d3d2eb1 amino acid (a.a.) range (LYS100)(LEU135)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS100) (SER106) E1
(GLU110) (TYR115) E2
(TYR115) (LEU135) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 154.2° E2
H3 72.6° 85.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3k9fa_ : (GLY210) (GLU230) [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |DNA Gyrase A |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1h3na2 : (SER227) (THR252) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Leucyl-tRNA synthetase (LeuRS) |Thermus thermophilus [TaxId: 274]
d4pfta_ : (LYS93) (LYS117) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1z8ma1 : (ASP64) (PHE88) [view usage] : d.298.1.2 |RelE-like |RelE-like |RelE-like |Hypothetical protein HP0894 |Helicobacter pylori [TaxId: 210]
d2xhfa_ : (VAL47) (ARG65) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Alvinella pompejana [TaxId: 6376]
d1r4ya_ : (VAL2) (ALA23) [view usage] : d.1.1.3 |Microbial ribonucleases |Microbial ribonucleases |Ribotoxin |alpha-Sarcin |Fungus (Aspergillus giganteus) [TaxId: 5060]
d1aqzb_ : (ALA1) (ALA36) [view usage] : d.1.1.3 |Microbial ribonucleases |Microbial ribonucleases |Ribotoxin |Restrictocin |Fungus (Aspergillus restrictus) [TaxId: 5064]
d4kl5b_ : (HIS72) (GLU91) [view usage] : b.86.1.0 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d1t2ra_ : (GLU70) (SER87) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2v83a_ : (ALA442) (ASP460) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2assa1 : (ALA1002) (LYS1022) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Cyclin A/CDK2-associated p45, Skp1 |Human (Homo sapiens) [TaxId: 9606]
d2be7d2 : (ILE133) (GLU151) [view usage] : g.41.7.1 |Rubredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Moritella profunda [TaxId: 111291]
d1d7ca_ : (LEU141) (HIS177) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d2xhfb_ : (VAL47) (ARG65) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Alvinella pompejana [TaxId: 6376]
d1xhna1 : (THR159) (ASN180) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Cellular repressor of E1A-stimulated genes CREG1 |Human (Homo sapiens) [TaxId: 9606]
d1gxbd2 : (GLY229) (GLY252) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d1hx3a_ : (GLU4) (HIS25) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d1rp0a1 : (ALA140) (ASN166) [view usage] : c.3.1.6 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |Thi4-like |Thiazole biosynthetic enzyme Thi4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4gidc_ : (VAL252) (TYR270) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
d1rv9a_ : (LEU73) (THR96) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein NMB0706 |Neisseria meningitidis, serogroup B [TaxId: 487]
d2p8wt3 : (GLU679) (ALA720) [view usage] : d.14.1.1 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Translational machinery components |Elongation factor 2 (eEF-2), domain IV |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1k4us_ : (LEU495) (GLU512) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |p67phox |Human (Homo sapiens) [TaxId: 9606]
d2hq7b_ : (GLU124) (TYR143) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypotheical protein CAC3491 |Clostridium acetobutylicum [TaxId: 1488]
d2v83b_ : (ALA442) (ASP460) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2x8da_ : (ARG160) (LEU202) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ldjb_ : (THR69) (LYS89) [view usage] : g.44.1.1 |RING/U-box |RING/U-box |RING finger domain, C3HC4 |RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex |Human (Homo sapiens) [TaxId: 9606]
d1pl3a_ : (LEU141) (HIS177) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d2jxya_ : (ARG304) (TRP325) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wiha_ : (ILE11) (GLY26) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Mouse (Mus musculus), mitochondrial [TaxId: 10090]
d2p4wa_ : (GLY79) (ARG102) [view usage] : a.4.5.64 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PF1790-like |Transcriptional regulatory protein PF1790 |Pyrococcus furiosus [TaxId: 2261]
d4k7oc_ : (VAL12) (LYS30) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2apna_ : (LEU60) (TYR78) [view usage] : b.124.1.0 |HesB-like domain |HesB-like domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d2ra2b_ : (GLY29) (LYS49) [view usage] : b.38.1.6 |Sm-like fold |Sm-like ribonucleoproteins |YgdI/YgdR-like |Uncharacterized protein YgdI |Salmonella typhimurium [TaxId: 90371]
d1jbra_ : (ALA1) (ALA36) [view usage] : d.1.1.3 |Microbial ribonucleases |Microbial ribonucleases |Ribotoxin |Restrictocin |Fungus (Aspergillus restrictus) [TaxId: 5064]
d1d7ba_ : (GLY139) (HIS177) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1mixa2 : (LYS357) (ASP375) [view usage] : b.55.1.5 |PH domain-like barrel |PH domain-like |Third domain of FERM |Talin |Chicken (Gallus gallus) [TaxId: 9031]
d1s1ga_ : (GLU40) (ARG60) [view usage] : d.42.1.2 |POZ domain |POZ domain |Tetramerization domain of potassium channels |Potassium channel kv4.3 |Human (Homo sapiens) [TaxId: 9606]
d3cw9a_ : (ALA156) (GLY190) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |4-chlorobenzoyl CoA ligase |Alcaligenes sp. AL3007 [TaxId: 206162]
d3wmmc_ : (PRO28) (GLN57) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |automated matches |Thermochromatium tepidum [TaxId: 1050]
d2qdla_ : (PRO11) (HIS32) [view usage] : b.40.7.0 |OB-fold |CheW-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1uwca_ : (VAL211) (GLY239) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Feruloyl esterase A |Aspergillus niger [TaxId: 5061]
d4pftb_ : (LYS93) (THR119) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1u3em1 : (HIS40) (CYS64) [view usage] : d.4.1.3 |His-Me finger endonucleases |His-Me finger endonucleases |Intron-encoded homing endonucleases |Intron-encoded homing endonuclease I-HmuI |Bacteriophage SPO1 [TaxId: 10685]
d3bpob1 : (ALA71) (VAL96) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rxqb_ : (ARG137) (GLY176) [view usage] : a.213.1.1 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |YfiT-like putative metal-dependent hydrolases |YfiT |Bacillus subtilis [TaxId: 1423]
d2wqta_ : (ALA182) (LEU201) [view usage] : d.177.1.1 |FAH |FAH |FAH |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3jspa2 : (GLY75) (LYS106) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2dsma1 : (ASP33) (LEU48) [view usage] : d.372.1.1 |YqaI-like |YqaI-like |YqaI-like |Hypothetical protein YqaI |Bacillus subtilis [TaxId: 1423]
d1xhnb_ : (THR159) (ASN180) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nb0a_ : (PRO12) (LEU45) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Human (Homo sapiens) [TaxId: 9606]
d1xova1 : (LEU296) (LYS314) [view usage] : b.34.11.4 |SH3-like barrel |Prokaryotic SH3-related domain |Ply C-terminal domain-like |Endolysin Ply, C-terminal domain |Bacteriophage Psa [TaxId: 171618]
d1m3da2 : (VAL144) (SER160) [view usage] : d.169.1.6 |C-type lectin-like |C-type lectin-like |Noncollagenous (NC1) domain of collagen IV |Noncollagenous (NC1) domain of collagen IV |Cow (Bos taurus) [TaxId: 9913]
d1nvfa_ : (LYS362) (VAL389) [view usage] : e.22.1.1 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Dehydroquinate synthase, DHQS |Dehydroquinate synthase, DHQS |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
d2hs3a3 : (TYR320) (ASN339) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 |Thermotoga maritima [TaxId: 2336]
d1zykc2 : (GLY229) (GLY252) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Sulfolobus solfataricus [TaxId: 2287]
d2fwrb2 : (VAL161) (ASN185) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
d3kvta_ : (ASN10) (LYS30) [view usage] : d.42.1.2 |POZ domain |POZ domain |Tetramerization domain of potassium channels |akv3.1 voltage-gated potassium channel |California sea hare (Aplysia californica) [TaxId: 6500]
d1eysc_ : (GLY7) (ASN34) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |Photosynthetic reaction centre (cytochrome subunit) |Thermochromatium tepidum [TaxId: 1050]
d1nfsa_ : (GLU4) (HIS25) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d4ge1d_ : (GLY53) (ASP82) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Rhodnius prolixus [TaxId: 13249]
d1dxrc_ : (THR8) (ASP35) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |Photosynthetic reaction centre (cytochrome subunit) |Rhodopseudomonas viridis [TaxId: 1079]
d1fusa_ : (SER2) (ASP30) [view usage] : d.1.1.4 |Microbial ribonucleases |Microbial ribonucleases |Fungal ribonucleases |RNase F1 |Fusarium moniliforme [TaxId: 117187]
d1fp7a_ : (ARG1514) (PRO1536) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Formyltetrahydrofolate synthetase |Moorella thermoacetica [TaxId: 1525]
d2ro5a_ : (ASP32) (ILE52) [view usage] : b.129.1.3 |Double-split beta-barrel |AbrB/MazE/MraZ-like |AbrB N-terminal domain-like |automated matches |Bacillus subtilis [TaxId: 1423]
d4qtbb_ : (GLU27) (THR43) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2zaaa_ : (HIS93) (LEU113) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Sphingomonas sp. [TaxId: 90322]
d1prcc_ : (THR8) (ALA36) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |Photosynthetic reaction centre (cytochrome subunit) |Rhodopseudomonas viridis [TaxId: 1079]
d1w9ga_ : (ASP66) (ALA102) [view usage] : d.330.1.1 |ERH-like |ERH-like |ERH-like |Enhancer of rudimentary homolog, ERH |Mouse (Mus musculus) [TaxId: 10090]
d1wz7a_ : (ASP66) (ARG97) [view usage] : d.330.1.1 |ERH-like |ERH-like |ERH-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2lgva_ : (CYS68) (ARG91) [view usage] : g.44.1.1 |RING/U-box |RING/U-box |RING finger domain, C3HC4 |RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex |Human (Homo sapiens) [TaxId: 9606]
d2oqma1 : (ILE113) (HIS134) [view usage] : a.213.1.3 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |Sden0562-like |Hypothetical protein Sden0562 |Shewanella denitrificans [TaxId: 192073]
d3t6ec_ : (THR8) (PRO39) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |Photosynthetic reaction centre (cytochrome subunit) |Rhodopseudomonas viridis [TaxId: 1079]
d1mzva_ : (LEU111) (GLY137) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Leishmania tarentolae [TaxId: 5689]
d4f0hb_ : (ASN610) (PRO633) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |automated matches |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d1pdua_ : (THR413) (GLY433) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear hormone receptor HR38 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2lwra_ : (HIS451) (GLY482) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1zysa_ : (ARG160) (LEU202) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cell cycle checkpoint kinase chk1 |Human (Homo sapiens) [TaxId: 9606]
d1zrla1 : (MET21) (LEU44) [view usage] : a.264.1.1 |Duffy binding domain-like |Duffy binding domain-like |Duffy binding domain |Erythrocyte binding antigen region II |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2dsmb_ : (ASP34) (LEU48) [view usage] : d.372.1.1 |YqaI-like |YqaI-like |YqaI-like |Hypothetical protein YqaI |Bacillus subtilis [TaxId: 1423]
d1tp9d_ : (GLY13) (VAL33) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Western balsam poplar (Populus trichocarpa) [TaxId: 3694]
d1uzaa_ : (VAL211) (GLY239) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Feruloyl esterase A |Aspergillus niger [TaxId: 5061]
d1sv6a_ : (ALA182) (LEU201) [view usage] : d.177.1.1 |FAH |FAH |FAH |2-keto-4-pentenoate hydratase MhpD |Escherichia coli [TaxId: 562]
d1pexa_ : (PRO442) (LEU464) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase-3 (MMP-13), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1zlta_ : (ARG160) (LEU202) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cell cycle checkpoint kinase chk1 |Human (Homo sapiens) [TaxId: 9606]
d1nvbb_ : (LYS362) (ALA392) [view usage] : e.22.1.1 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Dehydroquinate synthase, DHQS |Dehydroquinate synthase, DHQS |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
d1tp9a1 : (GLY13) (VAL33) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Plant peroxiredoxin |Western balsam poplar (Populus trichocarpa) [TaxId: 3694]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.94, b.29, b.50, e.22, d.144, b.40, c.37, c.47, c.55, b.60, d.169, d.14, d.194, b.1, e.23, e.11, b.45, a.123, b.129,
d.177, c.61, b.55, b.34, a.4, d.67, c.3, d.139, a.138, b.38, b.43, b.87, d.1, d.42, b.51, d.113, d.4, d.73, c.27, d.298,
b.66, g.41, a.264, g.44, b.124, b.86, a.213, g.50, d.330, d.372