Tableau information
Concept source: d1qlma_ amino acid (a.a.) range (ASP133)(GLY158)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP133) (CYS138) E1
(SER142) (GLU147) E2
(GLU147) (GLY158) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.1° E2
H3 130.1° -68.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3k5ma2 : (HIS397) (LEU432) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d1c04d_ : (ASN82) (ALA118) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d4fioc_ : (ASP135) (GLY160) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d3wp6a_ : (PHE159) (GLY188) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d1np2a_ : (PRO333) (GLU374) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Thermus nonproteolyticus [TaxId: 116039]
d3wp5a_ : (PHE159) (GLY188) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d4fiob_ : (ASP135) (GLY160) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1po3a_ : (SER160) (GLY210) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1wv3a2 : (TYR82) (VAL105) [view usage] : b.26.1.4 |SMAD/FHA domain |SMAD/FHA domain |EssC N-terminal domain-like |Protein EssC |Staphylococcus aureus [TaxId: 1280]
d4fiua1 : (SER82) (LEU109) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1rl8a_ : (GLY73) (ILE93) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2r3ta_ : (GLY73) (ILE93) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d4bcea_ : (PRO333) (GLY376) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4fioa_ : (ASP135) (GLY160) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d2v9tb_ : (ASN399) (ARG420) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2l2ba_ : (ASN113) (TYR135) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Sticholysin II |Carribean sea anemone (Stoichactis helianthus) [TaxId: 6123]
d2q63a_ : (GLY73) (ILE93) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d3ge5a_ : (PRO80) (GLY120) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
d1wmxa_ : (LEU115) (MET144) [view usage] : b.18.1.24 |Galactose-binding domain-like |Galactose-binding domain-like |Family 30 carbohydrate binding module, CBM30 (PKD repeat) |Endoglucanase CelJ |Clostridium thermocellum [TaxId: 1515]
d3oqaa_ : (GLY73) (ILE93) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d4hhha1 : (GLY16) (SER62) [view usage] : d.58.9.0 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |automated matches |automated matches |Pea (Pisum sativum) [TaxId: 3888]
d1bv9a_ : (GLY73) (GLY94) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d3ppsa3 : (HIS439) (LEU469) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Thielavia arenaria [TaxId: 113610]
d2fb5b_ : (GLY93) (PHE127) [view usage] : d.320.1.1 |YojJ-like |YojJ-like |YojJ-like |Hypothetical protein BC4920 (YojJ) |Bacillus cereus [TaxId: 1396]
d1bxna2 : (TYR27) (SER65) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Alcaligenes eutrophus [TaxId: 106590]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.10, b.19, d.58, i.1, b.29, b.50, f.4, b.18, b.6, b.26, d.90, b.97, d.147, d.320