Tableau information
Concept source: d2cwea1 amino acid (a.a.) range (VAL75)(GLY116)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL75) (ARG81) E1
(ASP84) (LEU90) E2
(ASP94) (GLY116) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 61.4° E2
H3 -78.4° -92.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3bt1u3 : (ARG89) (GLY108) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d2du2a_ : (THR167) (LYS188) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d2aifa1 : (ARG102) (GLN130) [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Ribosomal protein L7ae |Cryptosporidium parvum [TaxId: 5807]
d4pfta_ : (PRO505) (LEU545) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1t9ka_ : (VAL306) (THR320) [view usage] : c.124.1.5 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |IF2B-like |Probable methylthioribose-1-phosphate isomerase TM0911 |Thermotoga maritima [TaxId: 2336]
d1pxva_ : (PHE219) (ASN257) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Staphopain SspB |Staphylococcus aureus [TaxId: 1280]
d2au7a_ : (LYS148) (LYS173) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
d3sc6d_ : (ALA246) (GLY263) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2vbua_ : (LEU4) (SER23) [view usage] : b.43.5.2 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |CTP-dependent riboflavin kinase-like |CTP-dependent riboflavin kinase, Rfk |Methanococcus jannaschii [TaxId: 2190]
d1mjxa_ : (LYS148) (ASN174) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
d1jhda1 : (ARG154) (PHE173) [view usage] : b.122.1.3 |PUA domain-like |PUA domain-like |ATP sulfurylase N-terminal domain |ATP sulfurylase N-terminal domain |Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]
d1jcua_ : (ILE3) (GLY26) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein MTH1692 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2k1za_ : (GLY43) (ASP58) [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1vl7a_ : (ARG86) (ARG113) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Alr5027 |Nostoc sp. PCC 7120 [TaxId: 103690]
d1qdna1 : (MET1) (SER19) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d1uefb_ : (GLY5) (GLY22) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Docking protein 1, Dok1 |Mouse (Mus musculus) [TaxId: 10090]
d1o2db_ : (HIS-1) (LEU27) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
d3deba_ : (SER377) (ARG422) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d2poza2 : (TYR357) (LEU379) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Mesorhizobium loti [TaxId: 266835]
d4lyra_ : (MET107) (TRP129) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1p5tb_ : (GLY5) (GLY22) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Docking protein 1, Dok1 |Mouse (Mus musculus) [TaxId: 10090]
d1b70b3 : (GLY110) (GLY124) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |Domain B2 of PheRS-beta, PheT |Thermus thermophilus [TaxId: 274]
d4a17m_ : (CYS71) (GLY87) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2pgwc2 : (ASP349) (GLU377) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4dnxa1 : (ARG154) (PHE173) [view usage] : b.122.1.0 |PUA domain-like |PUA domain-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 572477]
d4lyqa_ : (MET107) (ILE130) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2pgwb2 : (ASP349) (SER375) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1uefa_ : (GLY5) (GLY22) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Docking protein 1, Dok1 |Mouse (Mus musculus) [TaxId: 10090]
d1q47b_ : (PHE155) (PRO170) [view usage] : b.69.12.1 |7-bladed beta-propeller |Sema domain |Sema domain |Semaphorin 3a |Mouse (Mus musculus) [TaxId: 10090]
d1cr5b1 : (ARG25) (ASN43) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]
d2onke1 : (GLY319) (GLU340) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d3cmba1 : (GLU206) (SER237) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d1p5ta_ : (GLY5) (GLY22) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Docking protein 1, Dok1 |Mouse (Mus musculus) [TaxId: 10090]
d1e7ka_ : (ARG97) (VAL128) [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Spliceosomal 15.5kd protein |Human (Homo sapiens) [TaxId: 9606]
d1inoa_ : (GLY147) (LYS175) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, b.69, i.1, d.92, c.124, e.22, b.40, d.3, b.122, b.45, d.347, b.52, b.55, d.79, a.4, b.43, b.36, g.7,
d.115