Tableau information
Concept source: d1jssa_ amino acid (a.a.) range (GLY170)(ARG222)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY170) (PRO175) E1
(LEU184) (GLY195) E2
(GLN199) (ARG222) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -167.0° E2
H3 -36.2° 138.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1u07a_ : (GLY174) (TRP213) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d2pnza2 : (ALA185) (ALA242) [view usage] : d.101.1.0 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |automated matches |automated matches |Pyrococcus abyssi [TaxId: 29292]
d4pj6a2 : (GLU426) (GLN469) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3vehb_ : (ARG138) (THR167) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1qyua_ : (VAL87) (PRO124) [view usage] : d.265.1.3 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase RsuA/RluD |Ribosomal large subunit pseudouridine synthase D, RluD |Escherichia coli [TaxId: 562]
d4fofa_ : (LEU536) (HIS597) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1u07b_ : (GLY174) (TRP213) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d3m7nh2 : (THR211) (GLU258) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 2, ECX2 |Archaeoglobus fulgidus [TaxId: 2234]
d3ufxa2 : (GLY125) (LYS143) [view usage] : c.23.4.0 |Flavodoxin-like |Succinyl-CoA synthetase domains |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d2q8ib_ : (ALA187) (TYR220) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Human (Homo sapiens) [TaxId: 9606]
d2p97b_ : (GLU174) (ALA200) [view usage] : d.157.1.12 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Ava3068-like |Hypothetical protein Ava3068 |Anabaena variabilis [TaxId: 1172]
d2piaa3 : (SER279) (THR303) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Phthalate dioxygenase reductase, C-terminal domain |Pseudomonas cepacia, db01 [TaxId: 292]
d1vhma_ : (GLU125) (THR172) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Hypothetical protein YebR |Escherichia coli [TaxId: 562]
d1b85a_ : (ILE-3) (ASP23) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Fungal peroxidase (ligninase) |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1akna_ : (ALA486) (LYS511) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Cow (Bos taurus) [TaxId: 9913]
d2br2b2 : (GLU186) (LYS239) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
d3lbed_ : (VAL18) (THR62) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1tmoa2 : (LYS20) (TYR52) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Trimethylamine N-oxide reductase |Shewanella massilia [TaxId: 76854]
d2eppa1 : (GLU288) (GLY315) [view usage] : g.37.1.1 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |Classic zinc finger, C2H2 |PATZ1 |Human (Homo sapiens) [TaxId: 9606]
d2c38v2 : (ASP188) (LYS239) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 1, ECX1 |Sulfolobus solfataricus [TaxId: 2287]
d2nlvb_ : (VAL58) (GLY87) [view usage] : d.326.1.1 |XisI-like |XisI-like |XisI-like |Hypothetical protein Ava3825 |Anabaena variabilis [TaxId: 1172]
d3logb_ : (ARG138) (ALA166) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d3jsta_ : (GLU61) (ILE95) [view usage] : d.74.1.0 |DCoH-like |PCD-like |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d1gkab_ : (THR112) (GLY155) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Alpha-crustacyanin |European lobster (Homarus gammarus) [TaxId: 6707]
d4f82b_ : (TYR134) (THR165) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d2ba0h2 : (THR211) (GLU258) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Exosome complex exonuclease 2, ECX2 |Archaeoglobus fulgidus [TaxId: 2234]
d2f3xa1 : (ILE79) (ALA120) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Transcription factor FapR, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1jssa_ : (GLY170) (ARG222) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Cholesterol-regulated Start protein 4 (Stard4). |Mouse (Mus musculus) [TaxId: 10090]
d3d7eo2 : (GLU342) (LEU382) [view usage] : c.55.1.4 |Ribonuclease H-like motif |Actin-like ATPase domain |Glycerol kinase |Glycerol kinase |Enterococcus casseliflavus [TaxId: 37734]
d2dnea_ : (ALA62) (LYS93) [view usage] : b.84.1.0 |Barrel-sandwich hybrid |Single hybrid motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nlva1 : (VAL58) (GLY87) [view usage] : d.326.1.1 |XisI-like |XisI-like |XisI-like |Hypothetical protein Ava3825 |Anabaena variabilis [TaxId: 1172]
d4p6zs_ : (ARG3) (ARG42) [view usage] : d.110.4.0 |Profilin-like |SNARE-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gskb_ : (ARG171) (ARG211) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d1jq4a_ : (LYS51) (LEU78) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Methane monooxygenase reductase N-terminal domain |Methylococcus capsulatus [TaxId: 414]
d4f82a_ : (TYR134) (THR165) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1b82a_ : (VAL-4) (ASP23) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Fungal peroxidase (ligninase) |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1g62a_ : (MET197) (ARG223) [view usage] : d.126.1.1 |Pentein, beta/alpha-propeller |Pentein |Ribosome anti-association factor eIF6 (aIF6) |Ribosome anti-association factor eIF6 (aIF6) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ehoc2 : (GLY31) (GLN56) [view usage] : d.344.1.2 |GINS/PriA/YqbF domain |PriA/YqbF domain |PSF2 N-terminal domain-like |DNA replication complex GINS protein PSF2 |Human (Homo sapiens) [TaxId: 9606]
d1f6wa_ : (THR486) (LYS511) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Bile-salt activated lipase (cholesterol esterase) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.81, d.157, d.92, a.93, d.129, c.23, c.47, c.55, b.60, d.126, d.110, d.38, b.84, d.15, d.74, d.265, d.101, d.161, d.326,
g.37, d.212, d.344