Tableau information
Concept source: d1vr5a1 amino acid (a.a.) range (GLY215)(GLY241)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY215) (PRO220) E1
(GLU221) (SER230) E2
(SER230) (GLY241) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 45.3° E2
H3 113.4° 140.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1p50a2 : (SER122) (SER157) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d2dtge5 : (THR334) (ASN357) [view usage] : c.10.2.5 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |L domain |Insulin receptor |Human (Homo sapiens) [TaxId: 9606]
d1qwma_ : (PRO290) (GLN312) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Helicobacter pylori [TaxId: 210]
d4skne_ : (LYS138) (PRO168) [view usage] : c.18.1.1 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase |Uracil-DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d4pfya_ : (GLY215) (GLY241) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d2xe0a_ : (LYS36) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1woga_ : (GLY71) (CYS111) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Agmatinase |Deinococcus radiodurans [TaxId: 1299]
d2a4wa_ : (SER2) (GLY26) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |automated matches |Streptomyces caespitosus [TaxId: 53502]
d2pocb_ : (ASP643) (GLY696) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Candida albicans [TaxId: 237561]
d4r31e_ : (GLY146) (ASN189) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d2jmua1 : (GLU30) (ASP51) [view usage] : d.63.1.2 |CYTH-like phosphatases |CYTH-like phosphatases |CYTH domain |Thiamine-triphosphatase (ThTPase) |Mouse (Mus musculus) [TaxId: 10090]
d2v3qa1 : (LYS82) (GLY118) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |PstS-like phosphate-binding protein |Human (Homo sapiens) [TaxId: 9606]
d1gz6a_ : (ARG248) (ASN272) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |(3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4m1va_ : (LYS82) (GLY118) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
d4ovsa_ : (LEU138) (ALA162) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfurospirillum deleyianum [TaxId: 525898]
d1w8xa_ : (GLY339) (GLY359) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d2qn6b_ : (LYS176) (GLU205) [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d3k8ou_ : (CYS78) (THR97) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Human (Homo sapiens) [TaxId: 9606]
d1ms0a1 : (VAL600) (SER623) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma cruzi [TaxId: 5693]
d5ptda_ : (ASN226) (ASN264) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
d2p7ua_ : (GLY109) (GLU131) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Trypanosoma brucei [TaxId: 31286]
d1ukfa_ : (GLY166) (VAL193) [view usage] : d.3.1.10 |Cysteine proteinases |Cysteine proteinases |Avirulence protein Avrpph3 |Avirulence protein Avrpph3 |Pseudomonas syringae pv. phaseolicola [TaxId: 319]
d3fuqa1 : (THR1057) (SER1082) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1m7sa_ : (PRO309) (GLN331) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Pseudomonas syringae [TaxId: 317]
d1ooea_ : (GLY70) (GLN103) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Dihydropteridin reductase (pteridine reductase) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d4ewpa1 : (ALA13) (ASP38) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Micrococcus luteus [TaxId: 465515]
d2f8sa2 : (LYS315) (THR334) [view usage] : c.55.3.10 |Ribonuclease H-like motif |Ribonuclease H-like |PIWI domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d2m1ia_ : (ASP8) (GLY33) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Cenarchaeum symbiosum [TaxId: 46770]
d4qxra_ : (ARG191) (ASP216) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d2as8a1 : (ALA108) (HIS135) [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Major mite fecal allergen der p 1 |House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]
d1vr5b_ : (GLY215) (GLY241) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d4pf8a_ : (LEU139) (GLN163) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfitobacter sp. [TaxId: 314267]
d2es3b_ : (GLY192) (GLY213) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Thrombospondin 1 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1k2vn_ : (GLY205) (ALA229) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d3w9va_ : (LYS82) (GLY118) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Unidentified prokaryotic [TaxId: 2725]
d3t94a_ : (ASN5) (PRO21) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1kpgd_ : (GLY219) (ASN246) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |CmaA1 |Mycobacterium tuberculosis [TaxId: 1773]
d1efdn_ : (GLY205) (ALA229) [view usage] : c.92.2.1 |Chelatase-like |"Helical backbone" metal receptor |Periplasmic ferric siderophore binding protein FhuD |Periplasmic ferric siderophore binding protein FhuD |Escherichia coli [TaxId: 562]
d1svja_ : (ASN316) (SER341) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Potassium-transporting ATPase B chain, KdpB |Escherichia coli [TaxId: 562]
d1vr5a1 : (GLY215) (GLY241) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1nw4a_ : (VAL147) (ASN177) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Putative uridine phosphorylase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1gyka_ : (GLY152) (GLY175) [view usage] : b.29.1.5 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Pentraxin (pentaxin) |Serum amyloid P component (SAP) |Human (Homo sapiens) [TaxId: 9606]
d1z78a1 : (GLY192) (GLY213) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Thrombospondin 1 N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1pota_ : (TYR129) (THR149) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Spermidine/putrescine-binding protein PotD |Escherichia coli [TaxId: 562]
d1z2bb1 : (ASN59) (SER80) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Cow (Bos taurus) [TaxId: 9913]
d1q0oa2 : (PRO210) (ARG236) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |Homoprotocatechuate 2,3-dioxygenase |Brevibacterium fuscum [TaxId: 47914]
d1b09a_ : (GLY154) (GLY177) [view usage] : b.29.1.5 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Pentraxin (pentaxin) |C-reactive protein (CRP) |Human (Homo sapiens) [TaxId: 9606]
d1dbta_ : (MET1) (LEU22) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.5, c.1, c.10, c.94, c.2, d.58, b.29, c.56, c.92, c.66, c.80, c.42, i.6, c.18, c.55, c.95, d.3, c.32, d.32, d.128,
d.63, d.95, d.26, d.387, d.220