Tableau information
Concept source: d3uq6a_ amino acid (a.a.) range (PRO270)(GLY315)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO270) (SER276) E1
(GLU280) (LYS290) E2
(GLY299) (GLY315) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.2° E2
H3 -46.2° 122.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1u5db_ : (SER176) (LYS210) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src kinase-associated phosphoprotein SKAP55 (SCAP1) |Human (Homo sapiens) [TaxId: 9606]
d3b0ha4 : (GLU509) (GLY551) [view usage] : d.134.1.0 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1bjoa_ : (GLY190) (ALA218) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Phosphoserine aminotransferase, PSAT |Escherichia coli [TaxId: 562]
d1nyqa2 : (ILE4) (SER30) [view usage] : d.15.10.1 |beta-Grasp (ubiquitin-like) |TGS-like |TGS domain |Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain |Staphylococcus aureus [TaxId: 1280]
d1dema_ : (LYS19) (ARG59) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Dendrotoxin I |African elapid snake (Dendroaspis polylepis polylepis) [TaxId: 8620]
d3j3bf_ : (SER7) (LEU43) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d1fana_ : (ARG20) (THR54) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Pancreatic trypsin inhibitor, BPTI |Cow (Bos taurus) [TaxId: 9913]
d1cdga2 : (ASP585) (GLN632) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |Cyclodextrin glycosyltransferase, C-terminal domain |Bacillus circulans, different strains [TaxId: 1397]
d1pxza_ : (ASP301) (LYS340) [view usage] : b.80.1.1 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectate lyase-like |Major pollen allergen Jun a 1 |Ozark white cedar (Juniperus ashei) [TaxId: 13101]
d2cwwb2 : (VAL173) (MET205) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d1gaxa2 : (PRO194) (ALA222) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Valyl-tRNA synthetase (ValRS) |Thermus thermophilus [TaxId: 274]
d1u08a_ : (LEU311) (TRP340) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Putative methionine aminotransferase YdbL |Escherichia coli [TaxId: 562]
d3m7qb_ : (PRO17) (ILE52) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |automated matches |Sea anemone (Stichodactyla helianthus) [TaxId: 6123]
d2uuyb1 : (ARG44) (CYS73) [view usage] : g.8.1.3 |BPTI-like |BPTI-like |Tick tryptase inhibitor-like |Tryptase inhibitor |Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]
d2bh2b2 : (MET246) (ASP283) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1nyqb2 : (ILE4) (SER30) [view usage] : d.15.10.1 |beta-Grasp (ubiquitin-like) |TGS-like |TGS domain |Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain |Staphylococcus aureus [TaxId: 1280]
d1wk9a_ : (TYR198) (ALA222) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |automated matches |Thermus thermophilus [TaxId: 274]
d3d65i_ : (SER22) (THR56) [view usage] : g.8.1.0 |BPTI-like |BPTI-like |automated matches |automated matches |Pseudonaja textilis [TaxId: 169397]
d1rgva_ : (ALA22) (CYS53) [view usage] : d.58.1.1 |Ferredoxin-like |4Fe-4S ferredoxins |Short-chain ferredoxins |Ferredoxin II |Thauera aromatica [TaxId: 59405]
d4caja_ : (ASP198) (LYS227) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2z83a2 : (GLU579) (GLY617) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Japanese encephalitis virus [TaxId: 11072]
d2pnzb2 : (GLY219) (GLN274) [view usage] : d.101.1.0 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |automated matches |automated matches |Pyrococcus abyssi [TaxId: 29292]
d3e77b_ : (GLY192) (ALA220) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b3ta_ : (GLY73) (LEU106) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Escherichia coli [TaxId: 562]
d4bd9b1 : (TYR16) (ASN53) [view usage] : g.8.1.0 |BPTI-like |BPTI-like |automated matches |automated matches |Sabellastarte magnifica [TaxId: 389514]
d3ruza_ : (ASP21) (ALA69) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1f5ri_ : (ILE19) (GLY56) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Pancreatic trypsin inhibitor, BPTI |Cow (Bos taurus) [TaxId: 9913]
d2qq2i_ : (ALA315) (LYS361) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bmlc3 : (HIS291) (PHE323) [view usage] : d.15.5.1 |beta-Grasp (ubiquitin-like) |Staphylokinase/streptokinase |Staphylokinase/streptokinase |Streptokinase |Streptococcus equisimilis [TaxId: 119602]
d2ipab_ : (ASP76) (GLU136) [view usage] : c.44.1.1 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |Low-molecular-weight phosphotyrosine protein phosphatases |automated matches |Bacillus subtilis [TaxId: 1423]
d2vnud1 : (VAL422) (LEU445) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exosome complex exonuclease RRP44 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tifa_ : (ASN42) (LYS78) [view usage] : d.15.8.1 |beta-Grasp (ubiquitin-like) |Translation initiation factor IF3, N-terminal domain |Translation initiation factor IF3, N-terminal domain |Translation initiation factor IF3, N-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d2i8fa_ : (LYS49) (SER80) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Pseudomonas stutzeri [TaxId: 96564]
d3izbu_ : (VAL5) (TYR48) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1tg7a2 : (ASP777) (ASN818) [view usage] : b.18.1.27 |Galactose-binding domain-like |Galactose-binding domain-like |Beta-galactosidase LacA, domains 4 and 5 |Beta-galactosidase LacA, domains 4 and 5 |Penicillium sp. [TaxId: 5081]
d4e04a1 : (LEU31) (GLU82) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d1wpwa_ : (ASP66) (TYR88) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Sulfolobus tokodaii [TaxId: 111955]
d1fpza_ : (ILE27) (GLY71) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Kinase associated phosphatase (kap) |Human (Homo sapiens) [TaxId: 9606]
d2bh2a2 : (MET246) (ASP283) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1kkoa2 : (ALA49) (ASP95) [view usage] : d.54.1.1 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |Enolase N-terminal domain-like |beta-Methylaspartase |Citrobacter amalonaticus [TaxId: 35703]
d1d7fa2 : (ASP585) (GLN632) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |Cyclodextrin glycosyltransferase, C-terminal domain |Bacillus sp., strain 1011 [TaxId: 1409]
d3l3te_ : (ALA16) (VAL54) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2yqga_ : (ILE62) (PRO84) [view usage] : b.1.6.0 |Immunoglobulin-like beta-sandwich |Cadherin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u5ga1 : (CYS185) (GLN219) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src-associated adaptor protein Skap2 |Mouse (Mus musculus) [TaxId: 10090]
d1shca_ : (TYR163) (LEU200) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Shc adaptor protein |Human (Homo sapiens) [TaxId: 9606]
d2g5fa1 : (LEU71) (LEU101) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1vsaf2 : (GLU119) (ALA150) [view usage] : d.141.1.1 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Ribosomal protein L6 |Thermus thermophilus [TaxId: 274]
d1jkta_ : (ILE145) (SER212) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Death-associated protein kinase, Dap |Human (Homo sapiens) [TaxId: 9606]
d1nyna_ : (VAL4) (ASN32) [view usage] : d.235.1.1 |FYSH domain |FYSH domain |Hypothetical protein Yhr087W |Hypothetical protein Yhr087W |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2nmqa_ : (TYR8) (GLY43) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Streptococcus sp. [TaxId: 1320]
d1p2ji_ : (ARG20) (THR54) [view usage] : g.8.1.1 |BPTI-like |BPTI-like |Small Kunitz-type inhibitors & BPTI-like toxins |Pancreatic trypsin inhibitor, BPTI |Cow (Bos taurus) [TaxId: 9913]
d3lrpa_ : (GLY50) (LEU77) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d3dbhf_ : (SER173) (LEU204) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
d3kdfa_ : (GLY65) (PHE109) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.67, d.58, i.1, c.66, c.77, c.45, c.72, d.144, b.40, c.37, b.18, d.169, b.1, d.110, d.38, c.111, b.55, d.134, a.3,
d.15, b.3, b.51, d.54, c.44, d.101, d.161, g.8, d.235, d.141