Tableau information
Concept source: d6csca_ amino acid (a.a.) range (THR55)(LEU78)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR55) (ASP59) E1
(GLY63) (ARG67) E2
(SER70) (LEU78) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.0° E2
H3 138.6° 43.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3lida1 : (ILE179) (LEU205) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d2a4oa_ : (VAL192) (ILE212) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis a virus hu/northern africa/mbb/1978 [TaxId: 12100]
d3lxbb2 : (SER401) (LEU425) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d4inla_ : (VAL170) (LEU201) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1n1ma1 : (ASN75) (GLY99) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl peptidase IV/CD26, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1orfa_ : (VAL212) (ILE242) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme A |Human (Homo sapiens) [TaxId: 9606]
d2co3a1 : (TRP74) (ARG95) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |SafA pilus subunit |Salmonella typhimurium [TaxId: 90371]
d1hava_ : (VAL192) (ILE212) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d1lb8b_ : (ILE100) (GLN130) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d2co2a_ : (TRP74) (ARG96) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella enterica [TaxId: 28901]
d1eyza1 : (GLY319) (VAL344) [view usage] : b.84.2.1 |Barrel-sandwich hybrid |Rudiment single hybrid motif |BC C-terminal domain-like |Glycinamide ribonucleotide transformylase PurT, C-domain |Escherichia coli [TaxId: 562]
d1jtoa_ : (CYS96) (GLY116) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Camel (Camelus dromedarius) [TaxId: 9838]
d2ijxa2 : (GLN184) (ASP203) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d2z55a_ : (THR71) (LEU92) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
d1ny722 : (GLY198) (GLY220) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |CPMV (Cowpea mosaic virus) [TaxId: 12264]
d3hg3b2 : (THR400) (LEU425) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d1g3ga_ : (CYS34) (GLU58) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Phosphotyrosine binding domain of Rad53 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1faxa_ : (THR206) (THR244) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Human (Homo sapiens) [TaxId: 9606]
d1m1jb2 : (GLY68) (THR97) [view usage] : h.1.8.1 |Parallel coiled-coil |Fibrinogen coiled-coil and central regions |Fibrinogen coiled-coil and central regions |Fibrinogen beta chain |Chicken (Gallus gallus) [TaxId: 9031]
d1ncia_ : (SER-1) (ASN31) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |N-cadherin (neural) |Mouse (Mus musculus) [TaxId: 10090]
d2omwb1 : (PRO6) (GLU31) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d1uaza_ : (THR73) (LEU93) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Archaerhodopsin-1 |Halobacterium sp. [TaxId: 2243]
d3no3a_ : (TYR56) (LEU94) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
d3suga_ : (ARG1155) (MET1179) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d4cztc_ : (LEU160) (PRO179) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3rc6a_ : (ARG1155) (MET1179) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NS3 protease |Hepatitis c virus subtype 1a [TaxId: 31646]
d2p7jb2 : (ILE153) (LEU179) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d1qa7b_ : (VAL192) (ILE212) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d2izpb_ : (PRO2067) (LEU2110) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Putative membrane antigen BipD |Burkholderia pseudomallei [TaxId: 28450]
d2fgea2 : (ASN802) (GLY824) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Presequence protease 1, PREP1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1md6a_ : (CYS7) (VAL35) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1F5 |Mouse (Mus musculus) [TaxId: 10090]
d2wo2a_ : (ASN81) (PRO112) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jy2o_ : (ASP70) (VAL114) [view usage] : h.1.8.1 |Parallel coiled-coil |Fibrinogen coiled-coil and central regions |Fibrinogen coiled-coil and central regions |Fibrinogen beta chain |Cow (Bos taurus) [TaxId: 9913]
d3lidb1 : (ILE179) (LEU205) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |GGDEF family protein VP0354 |Vibrio parahaemolyticus [TaxId: 670]
d2cnya_ : (TRP74) (ARG96) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella typhimurium [TaxId: 90371]
d1huja_ : (TYR2) (ILE32) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1bt7a_ : (ARG155) (LYS183) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NS3 protease |Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
d3qy2b_ : (GLU86) (ARG111) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3amra_ : (GLY309) (GLY335) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |automated matches |Bacillus subtilis [TaxId: 1423]
d1qa7a_ : (VAL192) (ILE212) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d3lnfa1 : (PRO5) (GLU31) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Mouse (Mus musculus) [TaxId: 10090]
d2peba_ : (TYR97) (LEU115) [view usage] : d.58.55.0 |Ferredoxin-like |DOPA-like |automated matches |automated matches |Nostoc punctiforme [TaxId: 63737]
d2bq4b_ : (HIS11) (ALA31) [view usage] : a.138.1.0 |Multiheme cytochromes |Multiheme cytochromes |automated matches |automated matches |Desulfovibrio africanus [TaxId: 873]
d1a1qc_ : (ARG155) (THR177) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NS3 protease |Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
d2j56h_ : (LYS248) (GLY276) [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
d2co6a_ : (TRP74) (ARG96) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella typhimurium [TaxId: 99287]
d3zvjm_ : (ILE138) (LYS164) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d1ud9a2 : (ALA184) (ILE204) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Sulfolobus tokodaii [TaxId: 111955]
d1jy2r_ : (ASP70) (SER113) [view usage] : h.1.8.1 |Parallel coiled-coil |Fibrinogen coiled-coil and central regions |Fibrinogen coiled-coil and central regions |Fibrinogen beta chain |Cow (Bos taurus) [TaxId: 9913]
d1ho5a2 : (ALA156) (GLY179) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Escherichia coli [TaxId: 562]
d1khta_ : (SER93) (LEU113) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Methanococcus voltae [TaxId: 2188]
d4inka_ : (VAL170) (LEU201) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1op8a_ : (VAL212) (GLY244) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Granzyme A |Human (Homo sapiens) [TaxId: 9606]
d3crea1 : (TRP74) (ARG96) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |SafA pilus subunit |Salmonella typhimurium [TaxId: 90371]
d4h0pa1 : (TYR171) (LYS208) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Cryptococcus neoformans [TaxId: 5207]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, c.1, c.94, d.159, d.58, b.69, b.47, d.144, b.40, c.37, c.47, d.185, c.55, a.103, b.18, b.121, b.2, b.1, d.110,
b.42, b.84, d.131, b.26, f.13, a.138, b.71, d.97, h.1, a.250