Tableau information
Concept source: d2lzza_ amino acid (a.a.) range (ASP3)(PRO25)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP3) (LYS7) E1
(GLY11) (PRO16) E2
(PRO16) (PRO25) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.6° E2
H3 112.5° 49.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1te0a2 : (ILE215) (ARG250) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Stress sensor protease DegS, catalytic domain |Escherichia coli [TaxId: 562]
d4hbua_ : (ALA255) (THR285) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d1onsa_ : (GLN9) (THR29) [view usage] : c.23.16.2 |Flavodoxin-like |Class I glutamine amidotransferase-like |DJ-1/PfpI |HSP31 (HchA; YedU) |Escherichia coli [TaxId: 562]
d3sudc_ : (VAL995) (THR1022) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d3h34a_ : (ASP2) (VAL24) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d2mc9a_ : (ASN9) (PRO36) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Catharanthus roseus [TaxId: 4058]
d1iild_ : (PRO29) (LYS61) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Basic FGF (FGF2) |Human (Homo sapiens) [TaxId: 9606]
d2rmpa_ : (ILE282) (LEU306) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Rhizomucor miehei [TaxId: 4839]
d1b3ba2 : (LYS34) (GLY65) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Thermotoga maritima [TaxId: 2336]
d1rkua_ : (CYS111) (LEU143) [view usage] : c.108.1.11 |HAD-like |HAD-like |Homoserine kinase ThrH |Homoserine kinase ThrH |Pseudomonas aeruginosa [TaxId: 287]
d3lgia_ : (ILE215) (GLY252) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4m0kb_ : (LEU94) (GLU115) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d3qapa_ : (VAL58) (LEU78) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1rhza_ : (VAL231) (ASN256) [view usage] : f.41.1.1 |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Methanococcus jannaschii [TaxId: 2190]
d1pgw21 : (SER26) (THR52) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
d2h4oa1 : (MSE20) (ASN43) [view usage] : d.368.1.1 |YonK-like |YonK-like |Yonk-like |Uncharacterized protein YonK |Bacillus subtilis [TaxId: 1423]
d2isga_ : (LEU323) (LYS359) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d1gzsd_ : (GLY155) (ALA169) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |GEF domain of SopE toxin |Salmonella typhimurium [TaxId: 90371]
d1de3a_ : (ALA1) (ALA37) [view usage] : d.1.1.3 |Microbial ribonucleases |Microbial ribonucleases |Ribotoxin |alpha-Sarcin |Fungus (Aspergillus giganteus) [TaxId: 5060]
d1o6ja_ : (PRO126) (LYS149) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin II |Crithidia fasciculata [TaxId: 5656]
d3lgib_ : (ILE215) (ARG250) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2a4va1 : (ASP71) (ASN91) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Peroxiredoxin dot5 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2f6sa1 : (LYS52) (LEU67) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |Cell filamentation protein Fic |Helicobacter pylori [TaxId: 210]
d1e0pa_ : (THR67) (ASP102) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
d2ozkc1 : (ALA30) (ARG61) [view usage] : c.66.1.48 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Nsp15 N-terminal domain-like |Nsp15 |SARS coronavirus [TaxId: 227859]
d4m0kc_ : (LEU94) (GLU115) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d3deba_ : (TYR330) (ASN368) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1s51a_ : (GLY65) (LEU87) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
d1wkva1 : (SER56) (GLY72) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |O-acetylserine sulfhydrylase (Cysteine synthase) |Aeropyrum pernix [TaxId: 56636]
d2xhna1 : (GLN161) (SER182) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d2od5a1 : (VAL63) (PRO92) [view usage] : a.4.5.70 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Marine metagenome family WH1 |Hypothetical protein GOS_3836187 |Environmental samples
d1ctla2 : (THR49) (PHE67) [view usage] : g.39.1.3 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |LIM domain |Cysteine-rich (intestinal) protein, CRP, CRIP |Chicken (Gallus gallus) [TaxId: 9031]
d2fxva_ : (ASN90) (SER115) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine phosphoribosyltransferase |Bacillus subtilis [TaxId: 1423]
d3zfeb_ : (ARG62) (THR87) [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Human enterovirus 71 [TaxId: 39054]
d1gzsb_ : (GLY155) (ALA169) [view usage] : a.168.1.1 |SopE-like GEF domain |SopE-like GEF domain |SopE-like GEF domain |GEF domain of SopE toxin |Salmonella typhimurium [TaxId: 90371]
d1qkla_ : (ILE904) (LEU923) [view usage] : a.143.1.2 |RPB6/omega subunit-like |RPB6/omega subunit-like |RPB6 |RPB6 |Human (Homo sapiens) [TaxId: 9606]
d1gyoa_ : (CYS5) (ARG32) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio gigas, di-tetraheme cytochrome c3 [TaxId: 879]
d1ot5a1 : (GLN465) (ASN501) [view usage] : b.18.1.20 |Galactose-binding domain-like |Galactose-binding domain-like |Proprotein convertase P-domain |Kexin, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1r64a1 : (GLN465) (ASN501) [view usage] : b.18.1.20 |Galactose-binding domain-like |Galactose-binding domain-like |Proprotein convertase P-domain |Kexin, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3t2da_ : (PRO300) (PRO324) [view usage] : d.280.1.1 |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |Sulfolobus fructose-1,6-bisphosphatase-like |automated matches |Thermoproteus neutrophilus [TaxId: 444157]
d4m0ka_ : (LEU94) (GLU115) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d1h2sa_ : (VAL58) (LEU78) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1xr0b_ : (LEU45) (ARG63) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |FGFR substrate 2 (SNT-1) |Human (Homo sapiens) [TaxId: 9606]
d1hzva2 : (GLN449) (ASP473) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
d2f93a_ : (GLY59) (LEU78) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1jlxa2 : (GLY163) (ASP195) [view usage] : b.42.3.1 |beta-Trefoil |Agglutinin |Agglutinin |Agglutinin |Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]
d1ehja_ : (ASP2) (GLY25) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c7 (cytochrome c551.5, PpcA) |Desulfuromonas acetoxidans [TaxId: 891]
d1iilc_ : (PRO29) (LYS61) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Basic FGF (FGF2) |Human (Homo sapiens) [TaxId: 9606]
d4h17a_ : (ALA156) (ASP184) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d3vsca_ : (SER56) (GLY72) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |Aeropyrum pernix [TaxId: 272557]
d1xtga_ : (ASP191) (GLY234) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1egya_ : (LYS62) (PHE86) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-ERYF |Saccharopolyspora erythraea [TaxId: 1836]
d2frya_ : (HIS3) (PRO37) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3suda_ : (SER991) (GLY1023) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d3njxa1 : (GLN161) (SER182) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |Rhamnogalacturonase B, RhgB, N-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1oqka_ : (ILE58) (VAL79) [view usage] : b.137.1.1 |Rof/RNase P subunit-like |Rof/RNase P subunit-like |RNase P subunit p29-like |Hypothetical protein MTH11 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1esca_ : (GLN270) (ASN305) [view usage] : c.23.10.1 |Flavodoxin-like |SGNH hydrolase |Esterase |Esterase |Streptomyces scabies [TaxId: 1930]
d2lzza_ : (ASP3) (PRO25) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d1orea_ : (LEU97) (GLU118) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Human (Homo sapiens) [TaxId: 9606]
d1p2ha1 : (CYS71) (CYS85) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella frigidimarina [TaxId: 56812]
d3l51b_ : (GLN741) (HIS759) [view usage] : d.215.1.0 |Smc hinge domain |Smc hinge domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2pr5a_ : (THR100) (SER147) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1apte_ : (THR251) (ASN273) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]
d2r3ya2 : (ILE215) (GLY252) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Stress sensor protease DegS, catalytic domain |Escherichia coli [TaxId: 562]
d1z8qa_ : (LYS62) (PHE86) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-ERYF |Saccharopolyspora erythraea [TaxId: 1836]
d3sufa_ : (VAL995) (THR1022) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1pgl22 : (VAL192) (GLY220) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |BPMV (Bean pod mottle virus) [TaxId: 12260]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.3, a.104, c.108, c.79, b.30, b.47, c.66, d.92, b.50, c.23, c.47, b.18, b.121, d.110, b.42, b.62, c.33, c.61, b.55,
b.34, a.4, f.13, a.138, c.58, d.1, a.265, f.41, g.39, d.280, d.215, b.137, a.168, a.143, d.368