Tableau information
Concept source: d3tqya_ amino acid (a.a.) range (LEU51)(LEU74)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU51) (TRP57) E1
(HIS58) (ASN64) E2
(ASN64) (LEU74) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -47.2° E2
H3 -133.7° -114.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2o2ab_ : (GLU2) (GLY27) [view usage] : d.33.1.2 |SecB-like |SecB-like |SP1558-like |Hypothetical protein gbs1413 |Streptococcus agalactiae [TaxId: 1311]
d3tqya_ : (LEU51) (LEU74) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d3wc3a_ : (GLY362) (GLN398) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Worm (Eisenia fetida) [TaxId: 6396]
d3c9xa_ : (PHE94) (ASP114) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1f1ra2 : (GLN271) (ASP294) [view usage] : d.32.1.3 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Extradiol dioxygenases |Homoprotocatechuate 2,3-dioxygenase |Arthrobacter globiformis [TaxId: 1665]
d3uxya_ : (ASP74) (ASN103) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d1iw7c_ : (GLY985) (MET1005) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d1e3pa6 : (ASP195) (GLY216) [view usage] : d.101.1.1 |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Ribonuclease PH domain 2-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |Streptomyces antibioticus [TaxId: 1890]
d2puha_ : (ASP104) (GLU124) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Burkholderia xenovorans [TaxId: 36873]
d1gm6a_ : (GLY20) (ARG42) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Salivary lipocalin |Pig (Sus scrofa) [TaxId: 9823]
d3zvzb_ : (HIS312) (ASN365) [view usage] : g.50.1.0 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eqqd_ : (MET648) (GLU669) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |ssDNA-binding protein |Escherichia coli [TaxId: 562]
d2gh1a1 : (ILE202) (GLY233) [view usage] : c.66.1.49 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |BC2162-like |Methyltransferase BC2162 |Bacillus cereus [TaxId: 1396]
d2wgqa4 : (TYR358) (LYS379) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d1tdba_ : (GLU250) (THR275) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d3o0da_ : (VAL1) (VAL31) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d1g87a1 : (GLY357) (THR389) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Endo/exocellulase:cellobiose E-4, N-terminal domain |Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]
d2uydx_ : (ASP112) (GLY142) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |Serratia marcescens [TaxId: 615]
d1bf6a_ : (GLY7) (LEU30) [view usage] : c.1.9.3 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Phosphotriesterase-like |Phosphotriesterase homology protein |Escherichia coli [TaxId: 562]
d4joqa_ : (GLY295) (TYR313) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349102]
d3cpfb2 : (GLY106) (GLY130) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ebna_ : (ASP193) (GLY242) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Endo-beta-N-acetylglucosaminidase |Flavobacterium meningosepticum, endoglycosidase F1 [TaxId: 238]
d3whua_ : (GLU129) (ALA164) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lvwb_ : (HIS0) (VAL21) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4o5hc_ : (SER335) (GLY371) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1ga2a1 : (GLY357) (THR389) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Endo/exocellulase:cellobiose E-4, N-terminal domain |Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]
d1lvwa_ : (HIS0) (VAL21) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2csqa_ : (LEU15) (GLU39) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3rh9a_ : (LYS314) (GLY350) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Marinobacter aquaeolei [TaxId: 351348]
d4joqb_ : (GLY295) (TYR313) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 349102]
d4jyza2 : (SER495) (ALA510) [view usage] : b.53.1.2 |Ribosomal protein L25-like |Ribosomal protein L25-like |Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain |Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain |Escherichia coli [TaxId: 562]
d2pbka_ : (GLY4) (LEU34) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |KSHV protease |Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]
d3uxyb_ : (ASP74) (LEU98) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d1o6xa_ : (PHE7) (ALA31) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d1u25c_ : (VAL44) (HIS90) [view usage] : c.45.1.4 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Selenomonas ruminantium [TaxId: 971]
d3tqyb_ : (GLN52) (LEU74) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d2mf2a_ : (PRO51) (LYS79) [view usage] : b.34.6.2 |SH3-like barrel |Cell growth inhibitor/plasmid maintenance toxic component |Kid/PemK |automated matches |Staphylococcus aureus [TaxId: 1280]
d3gu3a_ : (ILE202) (GLY233) [view usage] : c.66.1.49 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |BC2162-like |automated matches |Bacillus cereus [TaxId: 226900]
d2c8bx_ : (PRO187) (ALA210) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium botulinum [TaxId: 29342]
d4lefb_ : (GLY7) (LEU30) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1vbla_ : (TYR245) (HIS269) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Bacillus sp. [TaxId: 132676]
d1gz0f2 : (SER-10) (PRO19) [view usage] : d.79.3.3 |Bacillus chorismate mutase-like |L30e-like |RNA 2'-O ribose methyltransferase substrate binding domain |RlmB, N-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.69, c.2, d.58, c.68, b.29, c.82, b.30, a.102, d.117, c.66, c.93, c.45, b.50, b.40, d.166, b.60, d.32, d.79,
b.34, d.33, d.101, b.53, e.29, d.35, b.57, g.50