Tableau information
Concept source: d1v5ua_ amino acid (a.a.) range (PHE79)(LEU110)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE79) (THR85) E1
(ARG87) (ALA93) E2
(ASP95) (LEU110) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.2° E2
H3 17.9° 141.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3rnba_ : (LYS411) (ASP440) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d1adja1 : (GLY392) (GLY421) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d1ej1b_ : (ASN41) (ILE79) [view usage] : d.86.1.1 |eIF4e-like |eIF4e-like |Translation initiation factor eIF4e |Translation initiation factor eIF4e |Mouse (Mus musculus) [TaxId: 10090]
d1uw7a_ : (PRO71) (LEU112) [view usage] : b.140.1.1 |Replicase NSP9 |Replicase NSP9 |Replicase NSP9 |Replicase NSP9 |SARS coronavirus [TaxId: 227859]
d3wo2b_ : (ASP17) (ALA42) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-18 |Human (Homo sapiens) [TaxId: 9606]
d3og8a_ : (PHE892) (HIS912) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |RIG-I C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1pjta3 : (SER115) (LEU147) [view usage] : e.37.1.1 |Siroheme synthase middle domains-like |Siroheme synthase middle domains-like |Siroheme synthase middle domains-like |Siroheme synthase CysG, domains 2 and 3 |Salmonella typhimurium [TaxId: 90371]
d3hxga_ : (SER29) (THR66) [view usage] : d.86.1.0 |eIF4e-like |eIF4e-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
d3jw0d_ : (ILE757) (PHE796) [view usage] : d.148.1.0 |Hect, E3 ligase catalytic domain |Hect, E3 ligase catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2mb7a_ : (HIS32) (LEU55) [view usage] : d.10.1.0 |DNA-binding domain |DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2coaa1 : (CYS76) (MET119) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Protein kinase c, d2 type |Human (Homo sapiens) [TaxId: 9606]
d1u5gb_ : (CYS185) (GLY222) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src-associated adaptor protein Skap2 |Mouse (Mus musculus) [TaxId: 10090]
d3umab_ : (ARG127) (LEU161) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d4hhma_ : (ASN247) (ASP264) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces sp. [TaxId: 253732]
d1m33a_ : (TRP5) (TRP29) [view usage] : c.69.1.26 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Biotin biosynthesis protein BioH |Biotin biosynthesis protein BioH |Escherichia coli [TaxId: 562]
d1e9id1 : (GLY141) (GLY200) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Escherichia coli [TaxId: 562]
d3ojvc2 : (GLN284) (GLU324) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f2gb2 : (SER82) (ILE102) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d3rnaa_ : (LYS411) (ASP440) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d1atia1 : (VAL477) (ARG502) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Glycyl-tRNA synthetase (GlyRS), C-terminal domain |Thermus thermophilus [TaxId: 274]
d1pyba_ : (LYS36) (VAL62) [view usage] : b.40.4.4 |OB-fold |Nucleic acid-binding proteins |Myf domain |Structure-specific tRNA-binding protein TRBP111 |Aquifex aeolicus [TaxId: 63363]
d1e9ia1 : (GLY141) (GLY200) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Escherichia coli [TaxId: 562]
d1dida_ : (ASN246) (ASP263) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Arthrobacter, strain b3728 [TaxId: 1663]
d2hpua1 : (ALA97) (GLU130) [view usage] : d.357.1.1 |NosL/MerB-like |NosL/MerB-like |NosL-like |NosL |Achromobacter cycloclastes [TaxId: 223]
d3fn8a2 : (TYR83) (ILE102) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d2xzml_ : (ARG68) (ALA96) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3f0oa2 : (SER82) (ILE102) [view usage] : d.357.1.2 |NosL/MerB-like |NosL/MerB-like |MerB-like |Alkylmercury lyase MerB |Escherichia coli [TaxId: 562]
d3rnga_ : (TRP412) (ASP440) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d2rsja_ : (GLY7) (THR33) [view usage] : g.37.1.0 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4xiaa_ : (ASN246) (ASP263) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Arthrobacter, strain b3728 [TaxId: 1663]
d1wfla_ : (GLY39) (TYR54) [view usage] : g.80.1.1 |AN1-like Zinc finger |AN1-like Zinc finger |AN1-like Zinc finger |Zinc finger A20 domain containing protein 2 |Mouse (Mus musculus) [TaxId: 10090]
d4v1ac_ : (ALA279) (SER316) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1x0gb_ : (LEU55) (LEU77) [view usage] : b.124.1.0 |HesB-like domain |HesB-like domain |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d2ebta_ : (ARG371) (THR398) [view usage] : g.37.1.0 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ebta_ : (PRO432) (HIS451) [view usage] : g.37.1.0 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fz2b_ : (THR435) (PRO461) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1wpia1 : (LYS106) (TYR128) [view usage] : c.47.1.18 |Thioredoxin fold |Thioredoxin-like |YKR049C-like |Hypothetical protein YKR049C |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2j7qc1 : (THR152) (PHE183) [view usage] : d.3.1.20 |Cysteine proteinases |Cysteine proteinases |M48USP-like |Tegument protein M48; N-terminal domain |Murine cytomegalovirus (MCMV) [TaxId: 10366]
d2ee8a_ : (THR14) (THR41) [view usage] : g.37.1.1 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |Classic zinc finger, C2H2 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1z7qk1 : (LYS34) (GLN55) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1awea_ : (LYS111) (THR149) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Son of sevenless-1 (sos-1) |Human (Homo sapiens) [TaxId: 9606]
d4a17b_ : (SER154) (LEU197) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3rn9a_ : (LYS411) (ASP440) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d3gxba_ : (HIS1536) (ILE1568) [view usage] : c.62.1.0 |vWA-like |vWA-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, i.1, b.40, c.47, d.153, d.3, c.62, b.1, b.42, a.25, c.51, b.55, b.88, d.148, d.86, g.37, e.37, b.124, b.140,
d.357, d.10, g.80