Tableau information
Concept source: d4e4ga_ amino acid (a.a.) range (GLY16)(ALA51)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY16) (PHE22) E1
(GLY31) (SER37) E2
(SER37) (ALA51) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 145.1° E2
H3 -90.3° -80.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4lh1b_ : (ASP77) (LYS119) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1fx7b3 : (GLY160) (ILE178) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d2df7b_ : (ASN280) (THR302) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d1biqb_ : (THR174) (LEU203) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
d1huub_ : (GLU51) (LYS90) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d3o61d_ : (GLY45) (ASN73) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d4o5ha_ : (GLY37) (PHE73) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1stma_ : (GLY89) (ASN110) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |SPMV coat protein |Satellite panicum mosaic virus [TaxId: 154834]
d3bzwb_ : (PHE130) (PRO178) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d3bzwa1 : (PHE130) (PRO178) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d4a0ma_ : (ASN23) (ARG60) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
d1rp0a1 : (SER171) (GLY205) [view usage] : c.3.1.6 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |Thi4-like |Thiazole biosynthetic enzyme Thi4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1iwaa2 : (ARG81) (GLU109) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
d2onma_ : (ARG34) (GLN71) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
d4h73g_ : (ALA24) (LEU59) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
d1bwva2 : (ARG81) (GLU109) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
d4wj9a_ : (GLY35) (GLN72) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4o5hc_ : (GLY37) (PHE73) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1vjza_ : (ASP307) (TYR329) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase homologue TM1752 |Thermotoga maritima [TaxId: 2336]
d4jdpb_ : (SER0) (GLY17) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1yl4o1 : (ARG86) (GLY121) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S12 |Thermus thermophilus [TaxId: 274]
d4hhha1 : (TYR85) (GLU109) [view usage] : d.58.9.0 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |automated matches |automated matches |Pea (Pisum sativum) [TaxId: 3888]
d3u5ck_ : (LYS56) (ASN81) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1miqa_ : (MET30) (LYS55) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d1qb7a_ : (PRO2) (LYS25) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Leishmania donovani [TaxId: 5661]
d1mzva_ : (SER2) (LYS25) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Leishmania tarentolae [TaxId: 5689]
d4l0pb_ : (ARG133) (MET164) [view usage] : b.6.1.5 |Cupredoxin-like |Cupredoxins |Ephrin ectodomain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fpqa1 : (THR101) (VAL124) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Chalcone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1tzla2 : (LYS484) (GLY530) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Pyranose 2-oxidase |White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
d1ieha_ : (ALA92) (LYS122) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Llama (Lama glama) [TaxId: 9844]
d3u5en_ : (VAL121) (ASP145) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4wb9a_ : (GLY35) (GLN72) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4arva_ : (GLU197) (ALA230) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Yersinia kristensenii [TaxId: 28152]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.58, i.1, c.108, c.82, b.50, c.23, b.40, b.121, c.60, b.6, b.1, a.25, c.61, b.34, a.4, c.3, d.16, a.55, d.113