Tableau information
Concept source: d1ak4a_ amino acid (a.a.) range (VAL2)(PRO30)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL2) (VAL12) E1
(GLY18) (GLU23) E2
(PHE25) (PRO30) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.0° E2
H3 101.4° -63.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1t3ca_ : (GLU188) (GLY222) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |Botulinum neurotoxin |Clostridium botulinum, serotype E [TaxId: 1491]
d1dypa_ : (ARG176) (HIS205) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |kappa-Carrageenase, catalytic |Pseudoalteromonas carrageenovora [TaxId: 227]
d1uasa1 : (ASN297) (GLY321) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Rice (Oryza sativa) [TaxId: 4530]
d2wlwa_ : (PRO4) (PRO30) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d3nidc_ : (TYR237) (TRP260) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d1zzoa1 : (GLN51) (LYS70) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Lipoprotein DsbF |Mycobacterium tuberculosis [TaxId: 1773]
d3c9xa_ : (SER256) (ASN274) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d4hx2d_ : (GLY4) (THR52) [view usage] : d.84.1.0 |Subtilisin inhibitor |Subtilisin inhibitor |automated matches |automated matches |Streptomyces caespitosus [TaxId: 53502]
d3or1c_ : (ALA2) (GLY38) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |automated matches |Desulfovibrio gigas [TaxId: 879]
d3or2c_ : (ALA2) (GLY38) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |automated matches |Desulfovibrio gigas [TaxId: 879]
d1q5qh_ : (PRO192) (GLU223) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Rhodococcus erythropolis [TaxId: 1833]
d4kypa_ : (GLU38) (GLN72) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Hottentotta judaicus [TaxId: 6863]
d2vc2a_ : (TYR237) (TRP260) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d1vjfa_ : (HIS43) (GLY94) [view usage] : d.116.1.1 |YbaK/ProRS associated domain |YbaK/ProRS associated domain |YbaK/ProRS associated domain |Hypothetical protein CC0111 |Caulobacter crescentus [TaxId: 155892]
d1q8ka4 : (MET29) (ARG52) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2r7da2 : (LEU240) (GLU285) [view usage] : b.40.4.16 |OB-fold |Nucleic acid-binding proteins |RNB domain-like |Ribonuclease II family protein DR0020 |Deinococcus radiodurans [TaxId: 1299]
d1stma_ : (ALA17) (PRO45) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |SPMV coat protein |Satellite panicum mosaic virus [TaxId: 154834]
d1ya7a_ : (GLU211) (LEU233) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d3zboa_ : (GLY197) (GLY224) [view usage] : a.118.1.17 |alpha-alpha superhelix |ARM repeat |BC3264-like |automated matches |Bacillus cereus [TaxId: 1396]
d1duwa_ : (SER12) (ILE44) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 29577 [TaxId: 876]
d1od2a2 : (THR1898) (GLN1944) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Acetyl-coenzyme A carboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1z7qh1 : (ILE173) (LEU196) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3fcca_ : (ALA19) (PRO48) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d3fcca_ : (TYR148) (GLU178) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d4a2ba2 : (GLU274) (GLU322) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Cell division protein FtsA |Thermotoga maritima [TaxId: 2336]
d2gjua_ : (ILE123) (GLY147) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1f36a_ : (VAL13) (GLN41) [view usage] : a.4.1.12 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |FIS-like |FIS protein |Escherichia coli [TaxId: 562]
d1pixa3 : (GLY366) (ASP404) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Glutaconyl-CoA decarboxylase A subunit |Acidaminococcus fermentans [TaxId: 905]
d1xxea1 : (THR60) (LEU82) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1tyea_ : (TYR237) (TRP260) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d1bcga_ : (GLU38) (CYS69) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Scorpion (Buthotus judaicus), BJXTR-IT [TaxId: 6863]
d1ng9a1 : (ARG492) (LEU535) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Escherichia coli [TaxId: 562]
d3selx_ : (ASP3) (ALA23) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d3mi0r_ : (PRO492) (GLY528) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2v4jc1 : (GLU3) (VAL33) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |Desulfovibrio vulgaris [TaxId: 881]
d1zn3a_ : (GLU188) (HIS211) [view usage] : d.92.1.7 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Clostridium neurotoxins, catalytic domain |automated matches |Clostridium botulinum [TaxId: 1491]
d2ku2a_ : (GLU211) (LYS231) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d2yoaa_ : (LYS354) (ALA395) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1nm3a2 : (GLN11) (PHE31) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |N-terminal, Prx domain of Hybrid-Prx5 |Haemophilus influenzae [TaxId: 727]
d2oa4a1 : (ARG11) (VAL43) [view usage] : a.4.12.3 |DNA/RNA-binding 3-helical bundle |TrpR-like |SPO1678-like |Uncharacterized protein SPO1678 |Silicibacter pomeroyi [TaxId: 89184]
d1pmaa_ : (GLU211) (LYS231) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome alpha subunit (non-catalytic) |Thermoplasma acidophilum [TaxId: 2303]
d3ilwb_ : (GLY225) (GLY247) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1yx3a_ : (MET1) (ASN39) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |Allochromatium vinosum [TaxId: 1049]
d4foaa_ : (ARG99) (ARG120) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4dnza_ : (PHE298) (ASP329) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d1hxma1 : (TYR34) (ASN63) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), gamma-chain [TaxId: 9606]
d2alfa1 : (VAL2) (PRO30) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d3ifzb_ : (GLY225) (GLY247) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4nnnc_ : (GLU209) (GLN239) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1a76a2 : (PRO182) (ARG208) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |Flap endonuclease-1 (Fen-1 nuclease) |Methanococcus jannaschii [TaxId: 2190]
d3k0ra_ : (ASN3) (PRO30) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d1smja_ : (PRO329) (ASP363) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
d1c20a_ : (ARG45) (GLY67) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |DNA-binding domain from the dead ringer protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1mc8a2 : (PRO182) (LYS220) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |Flap endonuclease-1 (Fen-1 nuclease) |Pyrococcus horikoshii [TaxId: 53953]
d3t6dc_ : (THR8) (PRO39) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |automated matches |Blastochloris viridis [TaxId: 1079]
d2hrfa_ : (PHE140) (GLN158) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1irax_ : (LYS64) (PHE98) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d3s0ma_ : (PHE226) (LYS252) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
d2xsjc_ : (ALA2) (GLY38) [view usage] : d.203.1.1 |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |DsrC, the gamma subunit of dissimilatory sulfite reductase |automated matches |Desulfomicrobium norvegicum [TaxId: 52561]
d4wz8c2 : (THR1898) (GLN1944) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1vava_ : (THR6) (ARG27) [view usage] : b.29.1.18 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alginate lyase |Alginate lyase PA1167 |Pseudomonas aeruginosa [TaxId: 287]
d3ssia_ : (ALA8) (GLY57) [view usage] : d.84.1.1 |Subtilisin inhibitor |Subtilisin inhibitor |Subtilisin inhibitor |Subtilisin inhibitor |Streptomyces albogriseolus, s-3253 [TaxId: 1887]
d3k0na_ : (PRO4) (PRO30) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d4gvqa_ : (ARG23) (VAL42) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d2b5la1 : (GLU235) (SER256) [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
d3hfav_ : (PRO492) (GLY523) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1ak4a_ : (VAL2) (PRO30) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Cyclophilin (eukaryotic) |Human (Homo sapiens), variant A [TaxId: 9606]
d2o3ba1 : (ASP95) (SER118) [view usage] : d.4.1.2 |His-Me finger endonucleases |His-Me finger endonucleases |DNA/RNA non-specific endonuclease |Nuclease NucA |Nostoc sp. PCC 7120 [TaxId: 103690]
d2ku1a_ : (GLU211) (LYS231) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d1ryph_ : (ILE173) (LEU196) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3krdr_ : (PRO492) (GLY528) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1nnwa_ : (ILE123) (GLY147) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d1nnwb_ : (ILE123) (GLY147) [view usage] : d.159.1.5 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Phosphoesterase-related |Hypothetical protein PF1291 |Pyrococcus furiosus [TaxId: 2261]
d2rs4a_ : (MET1) (PRO21) [view usage] : b.62.1.1 |Cyclophilin-like |Cyclophilin-like |Cyclophilin (peptidylprolyl isomerase) |Peptidyl-prolyl cis-trans isomerase A, PpiA |Escherichia coli [TaxId: 562]
d1vsyd_ : (ILE4212) (GLU4242) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vjca_ : (GLY129) (LYS155) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, a.104, d.159, b.69, a.118, b.29, d.117, d.92, c.14, b.50, b.40, c.47, c.55, c.86, d.153, d.14, b.121, b.1, e.23, e.11,
d.116, b.42, b.62, c.120, a.4, a.138, b.7, b.71, d.4, a.113, g.3, d.203, d.147, d.84