Tableau information
Concept source: d1kz7d_ amino acid (a.a.) range (ASN1039)(TYR1064)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN1039) (MET1045) E1
(GLU1049) (ALA1059) E2
(ALA1059) (TYR1064) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.0° E2
H3 -124.0° 53.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1x86b_ : (ASN41) (TYR66) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoA |Human (Homo sapiens) [TaxId: 9606]
d2c7fa2 : (PRO359) (GLY385) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alpha-L-arabinofuranosidase, catalytic domain |Clostridium thermocellum [TaxId: 1515]
d1b3qa2 : (GLY652) (VAL671) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Histidine kinase CheA, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1um1a_ : (TYR8) (GLY34) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Hypothetical protein KIAA1849 |Human (Homo sapiens) [TaxId: 9606]
d2ii1b_ : (ASP269) (GLY295) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d1k1xa3 : (TRP161) (ARG188) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d1ng0a_ : (GLU114) (SER151) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |Cocksfoot mottle virus [TaxId: 40979]
d3wq6a_ : (ARG382) (GLU405) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Camellia sinensis [TaxId: 4442]
d1sh0b_ : (VAL395) (TRP417) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Norwalk virus [TaxId: 11983]
d3u1ra2 : (ALA403) (THR422) [view usage] : b.80.7.0 |Single-stranded right-handed beta-helix |beta-Roll |automated matches |automated matches |Flavobacterium sp. [TaxId: 686394]
d1kz7d_ : (ASN1039) (TYR1064) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |CDC42 |Human (Homo sapiens) [TaxId: 9606]
d2g1da1 : (ASN55) (TYR81) [view usage] : d.12.1.3 |Ribosomal proteins S24e, L23 and L15e |Ribosomal proteins S24e, L23 and L15e |Ribosomal protein S24e |Ribosomal protein S24e |Thermoplasma acidophilum [TaxId: 2303]
d4fioc_ : (ALA291) (PHE318) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1j5ob_ : (PRO55) (THR84) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3mgaa1 : (ASP76) (ARG122) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1go7p1 : (TYR401) (GLU422) [view usage] : b.80.7.1 |Single-stranded right-handed beta-helix |beta-Roll |Serralysin-like metalloprotease, C-terminal domain |Metalloprotease |Erwinia chrysanthemi [TaxId: 556]
d1huea_ : (ASN49) (VAL89) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d1khvb_ : (LYS403) (GLU427) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Rabbit hemorrhagic disease virus [TaxId: 11976]
d4fiob_ : (ALA291) (PHE318) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1z8pa_ : (LYS63) (PHE86) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-ERYF |Saccharopolyspora erythraea [TaxId: 1836]
d3fzqa_ : (ASN69) (GLU99) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d2ym9c_ : (LEU178) (ASN206) [view usage] : a.250.1.0 |IpaD-like |IpaD-like |automated matches |automated matches |Salmonella enterica [TaxId: 216597]
d2ii1a_ : (ASP269) (GLY295) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d3n08a_ : (PRO97) (MET133) [view usage] : b.17.1.0 |PEBP-like |PEBP-like |automated matches |automated matches |Chlamydia trachomatis [TaxId: 272561]
d1a6ca1 : (THR57) (GLU100) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Nepovirus capsid protein |TRSV (Tobacco ringspot virus) [TaxId: 12282]
d4o0ra_ : (GLY282) (PRO307) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u0ma2 : (MET223) (GLY258) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Putative polyketide synthase SCO1206 |Streptomyces coelicolor [TaxId: 1902]
d3l0id_ : (ASP47) (ARG74) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rqra1 : (SER207) (GLY229) [view usage] : b.141.1.1 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |5'-fluoro-5'-deoxyadenosine synthase |Streptomyces cattleya [TaxId: 29303]
d1oaca4 : (PRO60) (GLN85) [view usage] : d.82.1.1 |N domain of copper amine oxidase-like |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Escherichia coli [TaxId: 562]
d2ii1d_ : (GLY268) (GLY295) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d3tqka_ : (GLY313) (ARG353) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d3rzue_ : (GLN304) (GLY327) [view usage] : c.97.3.1 |Cytidine deaminase-like |JAB1/MPN domain |JAB1/MPN domain |Catalytic domain of AMSH |Human (Homo sapiens) [TaxId: 9606]
d1tyja1 : (ASN73) (SER102) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellulosomal scaffoldin ScaA |Bacteroides cellulosolvens [TaxId: 35825]
d2b6ed_ : (ASN110) (HIS144) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Haemophilus influenzae [TaxId: 727]
d2qdlb_ : (GLY127) (GLU146) [view usage] : b.40.7.0 |OB-fold |CheW-like |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d4dq8b2 : (GLY353) (LEU385) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d1lr5a_ : (LYS129) (ALA159) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Auxin binding protein |Maize (Zea mays) [TaxId: 4577]
d4fpda_ : (THR67) (ASP102) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 64091]
d4fioa_ : (ALA291) (PHE318) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d2qj4a1 : (GLY108) (ARG127) [view usage] : g.10.1.1 |Hairpin loop containing domain-like |Hairpin loop containing domain-like |Hairpin loop containing domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1gupa1 : (HIS11) (ARG31) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d4nyir_ : (ARG41) (TYR64) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |cH-p21 Ras protein |Human (Homo sapiens) [TaxId: 9606]
d2fuca1 : (GLY178) (SER209) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphomannomutase 1 |Human (Homo sapiens) [TaxId: 9606]
d2ii1c_ : (ASP269) (GLY295) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d2xzml_ : (VAL101) (LYS136) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d3u5cx_ : (GLU101) (GLU138) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3n08b_ : (PRO97) (ASP134) [view usage] : b.17.1.0 |PEBP-like |PEBP-like |automated matches |automated matches |Chlamydia trachomatis [TaxId: 272561]
d1f0xa2 : (PHE176) (ASP209) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |D-lactate dehydrogenase |Escherichia coli [TaxId: 562]
d4e78a_ : (ASN369) (TRP397) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 356411]
d1lb1b_ : (ASN41) (TYR66) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoA |Human (Homo sapiens) [TaxId: 9606]
d3nmoa_ : (MET204) (ASN233) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |automated matches |Escherichia coli [TaxId: 216592]
d2ia9a1 : (PRO48) (PHE91) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Bacillus subtilis [TaxId: 1423]
d2j3wb1 : (ALA158) (ASP186) [view usage] : d.278.1.2 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |TRAPP components |TRAPPC5, similar to trafficking protein particle complex 5 |Zebrafish (Danio rerio) [TaxId: 7955]
d3p8ka_ : (VAL223) (ASN248) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d4dq8a2 : (ALA354) (VAL384) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d2i9xb_ : (PRO48) (THR83) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Staphylococcus epidermidis [TaxId: 1282]
d3j38x_ : (GLU99) (GLU136) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3slca2 : (SER369) (ALA400) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d3grda_ : (PHE104) (LYS132) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bacillus cereus [TaxId: 222523]
d1z8oa_ : (LYS63) (PHE86) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-ERYF |Saccharopolyspora erythraea [TaxId: 1836]
d1xcgb_ : (ASN41) (TYR66) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoA |Human (Homo sapiens) [TaxId: 9606]
d1j26a_ : (LEU22) (ALA53) [view usage] : d.50.4.1 |dsRBD-like |Peptidyl-tRNA hydrolase domain-like |Peptidyl-tRNA hydrolase domain |Ict1 protein |Mouse (Mus musculus) [TaxId: 10090]
d1lr5b_ : (LYS129) (ALA159) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Auxin binding protein |Maize (Zea mays) [TaxId: 4577]
d1nlna_ : (MET56) (GLN82) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Human adenovirus 2 proteinase, adenain |Mastadenovirus H2 [TaxId: 10515]
d2lkpa_ : (VAL76) (HIS107) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2q8oa1 : (GLY79) (LYS104) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Glucocorticoid-induced TNF-related ligand, TNFSF18 |Mouse (Mus musculus) [TaxId: 10090]
d1k1xb3 : (TRP161) (ARG188) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d3p4ia2 : (GLY354) (GLY387) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium avium [TaxId: 1764]
d2jpda_ : (ASP129) (LEU148) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |DNA excision repair protein ERCC-1 |Human (Homo sapiens) [TaxId: 9606]
d3qo2a_ : (LEU65) (LEU96) [view usage] : b.34.13.0 |SH3-like barrel |Chromo domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ch4w1 : (GLY124) (ILE145) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Chemotaxis protein CheW |Thermotoga maritima [TaxId: 2336]
d1lqka_ : (ASP97) (ALA126) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Pseudomonas aeruginosa [TaxId: 287]
d3naha_ : (ILE398) (TRP420) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d1gw7b_ : (LEU2285) (ILE2332) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d3csba1 : (VAL384) (SER401) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Escherichia coli K-12 [TaxId: 83333]
d3qo9a1 : (PRO55) (THR84) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2wwxa_ : (ASP44) (ARG71) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lz2a_ : (HIS41) (CYS64) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |Lysozyme |Turkey (Meleagris gallopavo) [TaxId: 9103]
d3sila_ : (ASP100) (ARG132) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Salmonella sialidase |Salmonella typhimurium, strain lt2 [TaxId: 90371]
d3l07a2 : (VAL225) (VAL247) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d1qhwa_ : (TYR139) (VAL170) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |Mammalian purple acid phosphatase |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, e.8, c.1, b.82, a.104, c.2, d.159, c.6, i.1, c.108, i.6, d.144, b.40, f.20, c.37, c.55, d.2, c.95, b.121,
d.3, b.2, d.32, d.160, b.1, c.97, d.278, d.17, d.38, c.52, b.22, b.34, a.4, d.145, f.13, a.55, d.13, g.10, b.17, d.82,
b.36, b.23, d.50, d.12, d.366, a.250, d.147, b.141