Tableau information
Concept source: d2w6ka1 amino acid (a.a.) range (MSE1)(GLY36)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MSE1) (ILE5) E1
(SER7) (CYS15) E2
(SER20) (GLY36) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -19.1° E2
H3 127.7° 136.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vkfb_ : (GLY4) (LEU33) [view usage] : c.1.29.1 |TIM beta/alpha-barrel |GlpP-like |GlpP-like |Glycerol uptake operon antiterminator-related protein TM1436 |Thermotoga maritima [TaxId: 2336]
d1z33a_ : (PRO147) (HIS174) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Trichomonas vaginalis [TaxId: 5722]
d4fp8d_ : (PHE174) (VAL196) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d1glva1 : (TRP66) (ASP81) [view usage] : c.30.1.3 |PreATP-grasp domain |PreATP-grasp domain |Prokaryotic glutathione synthetase, N-terminal domain |Prokaryotic glutathione synthetase, N-terminal domain |Escherichia coli [TaxId: 562]
d4e4ga_ : (HIS361) (HIS405) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1muwa_ : (LYS131) (ASP149) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces olivochromogenes [TaxId: 1963]
d1biya2 : (GLY406) (ARG428) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]
d1blfa2 : (GLY406) (ARG428) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Cow (Bos taurus) [TaxId: 9913]
d2rmla1 : (SER3) (MET31) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Bacillus subtilis [TaxId: 1423]
d4unwa_ : (PHE174) (ILE196) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d2k7ha_ : (GLY1) (ALA26) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Soybean (Glycine max) [TaxId: 3847]
d2czvc1 : (ARG94) (LYS112) [view usage] : d.58.59.1 |Ferredoxin-like |Rnp2-like |Rpp14/Pop5-like |RNase P protein component 2, Rnp2 |Pyrococcus horikoshii [TaxId: 53953]
d3b07a_ : (ASN162) (GLY181) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d4luib_ : (LEU181) (MET230) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d4lypa_ : (LYS295) (LEU320) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d4lyra_ : (LYS295) (LEU320) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2lj4a_ : (LYS7) (SER53) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1ce7a_ : (SER83) (GLN116) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Mistletoe lectin I A-chain |European mistletoe (Viscum album) [TaxId: 3972]
d1v89a_ : (MET85) (GLY112) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rho-GTPase-activating protein 25 (KIAA0053) |Human (Homo sapiens) [TaxId: 9606]
d4edba_ : (LYS170) (HIS192) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d4aiua2 : (TYR335) (LYS381) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1k3fa_ : (THR150) (GLY191) [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Uridine phosphorylase |Escherichia coli [TaxId: 562]
d2r1ra2 : (GLY457) (TYR495) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Escherichia coli [TaxId: 562]
d2ckdb_ : (ARG104) (GLY148) [view usage] : c.66.1.57 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |ML2640-like |automated matches |Mycobacterium leprae [TaxId: 1769]
d3p54a1 : (ILE126) (ASN154) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |Japanese encephalitis virus [TaxId: 11072]
d2xfga_ : (GLY360) (PRO392) [view usage] : a.102.1.0 |alpha/alpha toroid |Six-hairpin glycosidases |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2mlla_ : (SER83) (GLN116) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Mistletoe lectin I A-chain |European mistletoe (Viscum album) [TaxId: 3972]
d4lyqa_ : (LYS295) (LEU320) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1p9ag_ : (THR103) (PRO148) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d1pwka_ : (ASP3) (LYS31) [view usage] : d.39.1.1 |DLC |DLC |DLC |Dynein light chain 1 (DLC1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1mo7a_ : (ASN384) (LEU427) [view usage] : d.220.1.1 |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Metal cation-transporting ATPase, ATP-binding domain N |Sodium/potassium-transporting ATPase alpha chain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1h3da1 : (VAL185) (ARG224) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain |Escherichia coli [TaxId: 562]
d1xk5a_ : (PRO226) (MET248) [view usage] : d.142.2.5 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |m3G-cap binding domain of snurportin-1 |m3G-cap binding domain of snurportin-1 |Human (Homo sapiens) [TaxId: 9606]
d1o1ha_ : (GLU131) (ASP149) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d4fgld_ : (LYS140) (THR156) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d1vkfa_ : (GLY4) (LEU33) [view usage] : c.1.29.1 |TIM beta/alpha-barrel |GlpP-like |GlpP-like |Glycerol uptake operon antiterminator-related protein TM1436 |Thermotoga maritima [TaxId: 2336]
d1bhga2 : (PRO34) (GLN62) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Glucuronidase |Human (Homo sapiens) [TaxId: 9606]
d1b0pa4 : (ASP485) (HIS525) [view usage] : c.64.1.1 |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Desulfovibrio africanus [TaxId: 873]
d4ubva1 : (MET1) (HIS25) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1gg4a3 : (ASP25) (GLY60) [view usage] : c.98.1.1 |MurF and HprK N-domain-like |MurE/MurF N-terminal domain |MurE/MurF N-terminal domain |UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF |Escherichia coli [TaxId: 562]
d4i1ia1 : (ALA81) (MET103) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Leishmania major [TaxId: 347515]
d1abra_ : (THR82) (ALA120) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Abrin A-chain |Abrus precatorius [TaxId: 3816]
d2guba_ : (GLU132) (ASP150) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |automated matches |Streptomyces rubiginosus [TaxId: 1929]
d2chna2 : (TYR335) (LYS381) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Glucosaminidase GH84, catalytic domain |Bacteroides thetaiotaomicron [TaxId: 818]
d2ahob3 : (LYS176) (GLU205) [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, b.19, c.94, c.2, d.58, c.82, c.56, a.102, c.66, d.165, d.129, c.23, c.7, c.95, b.18, b.55, d.142, c.30, d.26,
c.98, d.39, f.6, c.151, f.10, c.64, d.220