Tableau information
Concept source: d1b9ma3 amino acid (a.a.) range (GLN145)(LEU170)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN145) (LEU151) E1
(THR156) (ALA161) E2
(THR163) (LEU170) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.2° E2
H3 44.1° 119.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vb2a_ : (GLY73) (GLY105) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d2gsra2 : (PRO51) (SER73) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Pig (Sus scrofa) [TaxId: 9823]
d2qqsa2 : (GLN984) (TYR1004) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |Jumonji domain-containing protein 2A |Human (Homo sapiens) [TaxId: 9606]
d4av7a1 : (VAL350) (GLY390) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d4bp0a_ : (LYS252) (GLU308) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1kita2 : (GLY416) (SER439) [view usage] : b.29.1.8 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae [TaxId: 666]
d1joca1 : (ALA1387) (LEU1409) [view usage] : g.50.1.1 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |FYVE, a phosphatidylinositol-3-phosphate binding domain |Eea1 |Human (Homo sapiens) [TaxId: 9606]
d2p1ab_ : (GLU106) (GLU142) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein BCE2162 |Bacillus cereus [TaxId: 1396]
d4empa_ : (ILE4) (ARG28) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Staphylococcus aureus [TaxId: 196620]
d1eema2 : (VAL74) (GLU95) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class omega GST |Human (Homo sapiens) [TaxId: 9606]
d3e2ud_ : (GLY55) (GLN95) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Dynactin 1 |Human (Homo sapiens) [TaxId: 9606]
d1s98a_ : (ILE53) (ASP73) [view usage] : b.124.1.1 |HesB-like domain |HesB-like domain |HesB-like domain |Fe-S scaffold protein IscA (YfhF) |Escherichia coli [TaxId: 562]
d1r27a2 : (MET338) (VAL361) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d1fqvb2 : (PRO2) (LYS22) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Cyclin A/CDK2-associated p45, Skp1 |Human (Homo sapiens) [TaxId: 9606]
d2o5hb_ : (LEU65) (TRP89) [view usage] : d.363.1.1 |NMB0513-like |NMB0513-like |NMB0513-like |Hypothetical protein NMB0513 |Neisseria meningitidis [TaxId: 487]
d1sbbb1 : (PHE47) (TYR77) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin B, SEB |Staphylococcus aureus [TaxId: 1280]
d1wh2a_ : (ASN19) (ALA44) [view usage] : d.76.1.1 |GYF/BRK domain-like |GYF domain |GYF domain |Hypothetical rotein At5g08430 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1nyqa1 : (ASN614) (LYS642) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Threonyl-tRNA synthetase (ThrRS), C-terminal domain |Staphylococcus aureus [TaxId: 1280]
d2d81a1 : (SER205) (GLY237) [view usage] : c.69.1.37 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PHB depolymerase-like |Polyhydroxybutyrate depolymerase |Penicillium funiculosum [TaxId: 28572]
d2y43a_ : (ILE34) (LYS57) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d80a1 : (SER205) (GLY237) [view usage] : c.69.1.37 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PHB depolymerase-like |Polyhydroxybutyrate depolymerase |Penicillium funiculosum [TaxId: 28572]
d2koka_ : (PRO97) (LYS119) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Brucella abortus [TaxId: 235]
d3tq7p_ : (GLY55) (GLN95) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Dynactin 1 |Human (Homo sapiens) [TaxId: 9606]
d1dyqa1 : (HIS50) (LYS79) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d2e73a_ : (GLN62) (PHE80) [view usage] : g.49.1.0 |Cysteine-rich domain |Cysteine-rich domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2c8ua2 : (PRO54) (HIS82) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma haematobium) [TaxId: 6185]
d3p54a1 : (TYR202) (LEU221) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |Japanese encephalitis virus [TaxId: 11072]
d2cg2a2 : (GLU338) (GLY379) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d1r4ka_ : (PHE369) (ARG392) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 1 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1pd212 : (PRO52) (LYS73) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class sigma GST |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4fyqa2 : (VAL290) (GLY312) [view usage] : d.92.1.0 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y43b_ : (ILE34) (LYS57) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bp0b_ : (LYS252) (ARG310) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1lo5d1 : (HIS50) (LYS79) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d1f9nc1 : (HIS49) (PHE70) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d1regx_ : (HIS37) (GLY58) [view usage] : d.58.27.1 |Ferredoxin-like |Translational regulator protein regA |Translational regulator protein regA |Translational regulator protein regA |Bacteriophage T4 [TaxId: 10665]
d1tlta2 : (ARG241) (GLY267) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Virulence factor MviM |Escherichia coli [TaxId: 562]
d2c2vs1 : (GLU243) (GLY266) [view usage] : g.44.1.2 |RING/U-box |RING/U-box |U-box |STIP1 homology and U box-containing protein 1, STUB1 |Mouse (Mus musculus) [TaxId: 10090]
d1gyfa_ : (VAL26) (GLY56) [view usage] : d.76.1.1 |GYF/BRK domain-like |GYF domain |GYF domain |GYF domain from cd2bp2 protein |Human (Homo sapiens) [TaxId: 9606]
d1hx3b_ : (GLU4) (HIS25) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Isopentenyl diphosphate isomerase |Escherichia coli [TaxId: 562]
d1p22b2 : (PRO2) (GLN23) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |Cyclin A/CDK2-associated p45, Skp1 |Human (Homo sapiens) [TaxId: 9606]
d2qk0a_ : (GLY58) (THR98) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i4ga1 : (HIS50) (LYS79) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin A, SEA |Staphylococcus aureus [TaxId: 1280]
d2p1aa1 : (GLU106) (LEU140) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein BCE2162 |Bacillus cereus [TaxId: 1396]
d2fkba1 : (GLU10) (CYS34) [view usage] : d.113.1.2 |Nudix |Nudix |IPP isomerase-like |Hypothetical protein YfcD |Escherichia coli [TaxId: 562]
d2gtqa2 : (THR193) (GLY220) [view usage] : d.92.1.13 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Zn aminopeptidase catalytic domain |Aminopeptidase N (APN) catalytic domain |Neisseria meningitidis [TaxId: 122586]
d4ml2a_ : (TRP68) (GLY92) [view usage] : d.298.1.0 |RelE-like |RelE-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1txqa1 : (LYS56) (GLN95) [view usage] : b.34.10.1 |SH3-like barrel |Cap-Gly domain |Cap-Gly domain |Dynactin 1 |Human (Homo sapiens) [TaxId: 9606]
d1vaka_ : (GLY73) (GLY105) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d1qf6a3 : (HIS194) (ALA240) [view usage] : d.67.1.1 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Escherichia coli [TaxId: 562]
d2aq2b1 : (HIS47) (LYS76) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Staphylococcal enterotoxin C3, SEC3 |Staphylococcus aureus [TaxId: 1280]
d3ir5a1 : (MET338) (VAL361) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1t1ha_ : (ASP263) (ALA284) [view usage] : g.44.1.2 |RING/U-box |RING/U-box |U-box |E3 ubiquitin ligase PUB14 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1ws6a1 : (VAL15) (SER37) [view usage] : c.66.1.46 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |YhhF-like |Methyltransferase TTHA0928 |Thermus thermophilus [TaxId: 274]
d2m4ya_ : (MET1) (PRO34) [view usage] : g.41.5.1 |Rubredoxin-like |Rubredoxin-like |Rubredoxin |automated matches |Mycobacterium ulcerans [TaxId: 362242]
d1zava1 : (LYS114) (LEU134) [view usage] : d.58.62.1 |Ferredoxin-like |Ribosomal protein L10-like |Ribosomal protein L10-like |Ribosomal protein L10 |Thermotoga maritima [TaxId: 2336]
d1oana2 : (MET196) (ASP215) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Dengue virus type 2 [TaxId: 11060]
d3l2oa1 : (ALA1002) (GLN1023) [view usage] : d.42.1.1 |POZ domain |POZ domain |BTB/POZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jhsa_ : (GLN152) (LYS189) [view usage] : d.107.1.1 |Mog1p/PsbP-like |Mog1p/PsbP-like |Ran-binding protein mog1p |Ran-binding protein mog1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, c.81, d.58, b.29, d.157, c.66, d.92, c.14, b.40, c.47, b.121, d.81, c.51, b.34, a.4, d.67, d.42, d.113, d.298, g.41,
g.44, f.10, d.76, b.124, d.107, a.213, g.50, d.363, g.49