Tableau information
Concept source: d4fioc_ amino acid (a.a.) range (LYS74)(ALA94)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS74) (PRO78) E1
(SER79) (ASP85) E2
(ALA88) (ALA94) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -66.4° E2
H3 66.2° 115.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vlya2 : (THR20) (GLN44) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Hypothetical protein YgfZ, N-terminal domain |Escherichia coli [TaxId: 562]
d1zrra_ : (PRO148) (ILE163) [view usage] : b.82.1.6 |Double-stranded beta-helix |RmlC-like cupins |Acireductone dioxygenase |Acireductone dioxygenase |Klebsiella pneumoniae [TaxId: 573]
d1dysa_ : (GLN262) (ASN284) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellobiohydrolase II (Cel6) |Humicola insolens, Cel6b [TaxId: 34413]
d4fioc_ : (LYS74) (ALA94) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d1cj5a_ : (GLY17) (ASP33) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d2zyna_ : (LYS126) (GLY141) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermoactinomyces vulgaris [TaxId: 2026]
d1rw9a3 : (VAL617) (ASN644) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Arthrobacter aurescens [TaxId: 43663]
d3hcha_ : (GLY491) (GLY513) [view usage] : b.88.1.3 |Mss4-like |Mss4-like |SelR domain |automated matches |Neisseria meningitidis [TaxId: 65699]
d1zk6a_ : (GLY116) (GLY141) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1fjda_ : (ASN36) (GLY61) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Parvulin |Human (Homo sapiens), hpar14 [TaxId: 9606]
d1evka2 : (LEU353) (VAL376) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Escherichia coli [TaxId: 562]
d1nrka2 : (LEU21) (VAL45) [view usage] : d.250.1.1 |Folate-binding domain |Folate-binding domain |Aminomethyltransferase folate-binding domain |Hypothetical protein YgfZ, N-terminal domain |Escherichia coli [TaxId: 562]
d2htva_ : (GLY88) (SER110) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza A virus [TaxId: 11320]
d2kgja_ : (GLY84) (HIS100) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d3tewa1 : (LYS722) (GLY735) [view usage] : f.60.1.1 |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax protective antigen C-terminal-like |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1v4sa1 : (PHE195) (ASP217) [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Glucokinase |Human (Homo sapiens) [TaxId: 9606]
d2bp0a2 : (ARG168) (LEU207) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d3sn2a2 : (PRO659) (SER681) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3mama_ : (GLY106) (ASN123) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Osmoprotection protein ProX |Archaeoglobus fulgidus [TaxId: 2234]
d3mama_ : (PRO212) (ASP227) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Osmoprotection protein ProX |Archaeoglobus fulgidus [TaxId: 2234]
d1r6za2 : (ALA108) (PRO122) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d4ne4a_ : (PRO106) (ASN123) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d4ne4a_ : (PRO222) (HIS238) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d2hrxa1 : (SER130) (GLY153) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d3ppsa2 : (ASP165) (ASN191) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Thielavia arenaria [TaxId: 113610]
d4fioa_ : (LYS74) (ALA94) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Methanobrevibacter ruminantium [TaxId: 634498]
d4ntmf_ : (LEU30) (PHE62) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Escherichia coli [TaxId: 469008]
d1e5ma1 : (VAL234) (GLY254) [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Synechocystis sp. [TaxId: 1143]
d1r6zz2 : (ALA108) (PRO122) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1z3ix2 : (GLY110) (LYS127) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Rad54-like, Rad54L |Zebrafish (Danio rerio) [TaxId: 7955]
d4oqoa_ : (LEU589) (LEU617) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Cow (Bos taurus) [TaxId: 9913]
d1b4ma_ : (GLY7) (ASP25) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1igoa_ : (GLY44) (GLY64) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Bacillus subtilis, B230 [TaxId: 1423]
d3seya_ : (ALA110) (PRO124) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Escherichia coli [TaxId: 562]
d1j0ma3 : (THR633) (ASP659) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Xanthan lyase |Bacillus sp. GL1 [TaxId: 84635]
d2e24a3 : (THR633) (ASP659) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Bacillus sp. [TaxId: 84635]
d1hxrb_ : (THR35) (ASP56) [view usage] : b.88.1.1 |Mss4-like |Mss4-like |RabGEF Mss4 |RabGEF Mss4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hxrb_ : (ASP61) (GLU78) [view usage] : b.88.1.1 |Mss4-like |Mss4-like |RabGEF Mss4 |RabGEF Mss4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2fnia_ : (LYS2) (SER25) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Spore coat polysaccharide biosynthesis protein C |Helicobacter pylori [TaxId: 210]
d1e1ca1 : (GLU473) (GLU502) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d3kzua1 : (VAL238) (GLY258) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Brucella melitensis [TaxId: 29459]
d4nd9a_ : (PRO222) (HIS238) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d1j3lf_ : (ARG30) (GLU53) [view usage] : c.8.7.1 |The "swivelling" beta/beta/alpha domain |RraA-like |RraA-like |Demethylmenaquinone methyltransferase |Thermus thermophilus [TaxId: 274]
d1r18a_ : (ILE-1) (GLY21) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3u5em_ : (GLN62) (ALA89) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4hwra1 : (LEU353) (VAL376) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1g7yd_ : (TYR218) (ARG250) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]
d2hava1 : (LEU579) (ILE600) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d1cmja_ : (LYS59) (ALA79) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-NOR, nitric reductase |Fungus (Fusarium oxysporum) [TaxId: 5507]
d1vbla_ : (HIS199) (GLY218) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Bacillus sp. [TaxId: 132676]
d2gtia2 : (GLY314) (LEU337) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |Murine hepatitis virus, MHV [TaxId: 11138]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, c.1, b.82, c.67, c.94, a.104, c.6, i.1, b.29, b.30, c.66, c.37, d.104, c.55, c.95, b.60, d.96, b.6, c.8,
d.250, b.88, d.26, d.310, d.294, d.147, f.60