Tableau information
Concept source: d4jshb_ amino acid (a.a.) range (LEU577)(ASP600)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU577) (ALA581) E1
(ALA581) (TRP587) E2
(THR591) (ASP600) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -67.0° E2
H3 -63.8° -110.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2a1kb_ : (LYS112) (GLU131) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |automated matches |Enterobacteria phage [TaxId: 12353]
d1u5db_ : (LYS152) (SER176) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src kinase-associated phosphoprotein SKAP55 (SCAP1) |Human (Homo sapiens) [TaxId: 9606]
d1e7kb_ : (ARG97) (VAL128) [view usage] : d.79.3.1 |Bacillus chorismate mutase-like |L30e-like |L30e/L7ae ribosomal proteins |Spliceosomal 15.5kd protein |Human (Homo sapiens) [TaxId: 9606]
d2o14a1 : (LYS14) (ARG53) [view usage] : b.18.1.32 |Galactose-binding domain-like |Galactose-binding domain-like |YxiM N-terminal domain-like |Hypothetical protein YxiM |Bacillus subtilis [TaxId: 1423]
d1kjza2 : (ASP323) (VAL344) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Initiation factor eIF2 gamma subunit |Pyrococcus abyssi [TaxId: 29292]
d2df7b_ : (SER361) (LEU383) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d1s0ua2 : (GLU350) (LYS370) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Initiation factor eIF2 gamma subunit |Methanococcus jannaschii [TaxId: 2190]
d3cmbd_ : (GLU206) (SER237) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d1u5gb_ : (LYS161) (CYS185) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src-associated adaptor protein Skap2 |Mouse (Mus musculus) [TaxId: 10090]
d2ruca_ : (ALA7) (SER26) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Mitotic rotamase PIN1, domain 2 |Human (Homo sapiens) [TaxId: 9606]
d2v76b_ : (SER5) (GLY21) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3cmbb_ : (GLU206) (SER237) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d4atfc_ : (THR182) (LYS209) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Zobellia galactanivorans [TaxId: 63186]
d2v76d_ : (SER5) (GLY21) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3exjb_ : (GLN97) (MET120) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ij6c_ : (LEU2) (GLU24) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
d1lnla2 : (PRO350) (GLY369) [view usage] : b.112.1.1 |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |C-terminal domain of mollusc hemocyanin |Mollusca (Rapana thomasiana) [TaxId: 29165]
d3qjgb_ : (THR155) (PHE171) [view usage] : c.34.1.0 |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |Homo-oligomeric flavin-containing Cys decarboxylases, HFCD |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d2f6ka1 : (SER2) (VAL23) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative amidohydrolase LP2961 |Lactobacillus plantarum [TaxId: 1590]
d1lvwb_ : (ASN167) (VAL181) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d4ho4a_ : (SER167) (VAL181) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d1lvwa_ : (ASN167) (VAL181) [view usage] : c.68.1.6 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |glucose-1-phosphate thymidylyltransferase |RmlA (RfbA) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1juva_ : (PHE114) (ALA136) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductase, prokaryotic type |Bacteriophage T4 [TaxId: 10665]
d1yqqa_ : (GLY128) (LEU148) [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3hafa_ : (GLY127) (ASN153) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j0ea_ : (GLU252) (CYS268) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d4atfa_ : (THR182) (LYS209) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1e57a_ : (ARG68) (SER87) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |PHMV (Physalis mottle virus) [TaxId: 72539]
d1k75a_ : (SER199) (ARG224) [view usage] : c.82.1.2 |ALDH-like |ALDH-like |L-histidinol dehydrogenase HisD |L-histidinol dehydrogenase HisD |Escherichia coli [TaxId: 562]
d1h7ea_ : (ARG168) (ASN185) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase |Escherichia coli, KpsU [TaxId: 562]
d4bgea_ : (GLY183) (GLY205) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
d1y16a_ : (GLY126) (GLU152) [view usage] : d.6.1.1 |Prion-like |Prion-like |Prion-like |Prion protein domain |Mouse (Mus musculus) [TaxId: 10090]
d1bhga2 : (HIS94) (GLN113) [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Glucuronidase |Human (Homo sapiens) [TaxId: 9606]
d2a73b8 : (PRO1594) (GLY1638) [view usage] : b.40.3.3 |OB-fold |TIMP-like |Netrin-like domain (NTR/C345C module) |Complement C3 domain C345C |Human (Homo sapiens) [TaxId: 9606]
d2avwd_ : (PHE69) (LEU93) [view usage] : d.3.1.12 |Cysteine proteinases |Cysteine proteinases |IgG-specific endopeptidase IdeS (Sib38) |automated matches |Streptococcus pyogenes [TaxId: 293653]
d1u5ga1 : (LYS161) (CYS185) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src-associated adaptor protein Skap2 |Mouse (Mus musculus) [TaxId: 10090]
d2jnab_ : (THR213) (HIS232) [view usage] : d.230.6.1 |Dodecin subunit-like |YdgH-like |YdgH-like |Hypothetical protein STM0082 |Salmonella typhimurium [TaxId: 90371]
d1u8rh3 : (SER161) (ILE178) [view usage] : b.34.1.2 |SH3-like barrel |C-terminal domain of transcriptional repressors |FeoA-like |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d1ix5a_ : (GLY8) (GLY37) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Archaeal FKBP |Methanococcus thermolithotrophicus [TaxId: 2186]
d1gqca_ : (ARG168) (ASN185) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase |Escherichia coli, KpsU [TaxId: 562]
d4n8x4_ : (ILE3) (VAL22) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carbon dioxide concentrating mechanism protein CcmL |Nostoc sp. [TaxId: 103690]
d2qosc_ : (GLY29) (GLU45) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3jqjb_ : (GLU18) (GLY45) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1kk0a2 : (ASP323) (VAL344) [view usage] : b.44.1.1 |Elongation factor/aminomethyltransferase common domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |Initiation factor eIF2 gamma subunit |Pyrococcus abyssi [TaxId: 29292]
d2idea_ : (GLU18) (GLY45) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2df7a1 : (SER361) (LEU383) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |Birnavirus VP2 |Infectious bursal disease virus [TaxId: 10995]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.58, c.68, c.79, b.29, c.82, c.56, b.40, b.60, b.18, b.121, d.3, d.174, b.2, c.71, d.347, b.55, d.79, b.34,
c.34, d.26, d.6, b.44, d.230, b.112