Tableau information
Concept source: d3rtld_ amino acid (a.a.) range (THR425)(LYS456)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR425) (LYS436) E1
(ASP439) (ASP450) E2
(ASP450) (LYS456) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.5° E2
H3 -122.3° 68.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qy9c1 : (LYS2) (SER31) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein YddE |Escherichia coli [TaxId: 562]
d3mu6a_ : (GLU42) (TYR72) [view usage] : d.88.1.1 |SRF-like |SRF-like |SRF-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3eq5d_ : (SER155) (ARG176) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3u5ce_ : (ASP88) (SER120) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1lqsr2 : (THR103) (PHE140) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-10 receptor 1, IL-10R1 |Human (Homo sapiens) [TaxId: 9606]
d1npbc_ : (ALA100) (LYS129) [view usage] : d.32.1.2 |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |Antibiotic resistance proteins |Fosfomycin resistance protein A (FosA) |Serratia marcescens [TaxId: 615]
d1qy9a1 : (PRO3) (SER31) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein YddE |Escherichia coli [TaxId: 562]
d2o61b2 : (SER208) (SER246) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |p50 subunit of NF-kappa B (NFKB), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3g7ka1 : (PRO8) (PRO28) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Eubacterium barkeri [TaxId: 1528]
d2fk6a1 : (MET1) (ARG31) [view usage] : d.157.1.7 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |RNase Z-like |Ribonuclease Z (RNase Z) |Bacillus subtilis [TaxId: 1423]
d3eq5j_ : (SER155) (ARG176) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3j38e_ : (ASP88) (LYS120) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1vm7a_ : (VAL4) (GLU54) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Ribokinase |Thermotoga maritima [TaxId: 2336]
d3eq5e_ : (SER155) (ARG176) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h9fa2 : (LYS210) (GLY229) [view usage] : d.21.1.4 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PA0793-like |Hypothetical protein PA0793 |Pseudomonas aeruginosa [TaxId: 287]
d1lqss2 : (THR103) (PHE140) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-10 receptor 1, IL-10R1 |Human (Homo sapiens) [TaxId: 9606]
d3gzxa1 : (HIS123) (CYS144) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Comamonas testosteroni [TaxId: 285]
d4ni2b_ : (GLY526) (GLY557) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1iz1a1 : (LEU47) (GLY88) [view usage] : a.4.5.37 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LysR-like transcriptional regulators |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d1m9sa3 : (ARG518) (ASN546) [view usage] : b.34.11.1 |SH3-like barrel |Prokaryotic SH3-related domain |GW domain |Internalin B, C-terminal domains |Listeria monocytogenes [TaxId: 1639]
d1o9ga_ : (LEU227) (GLU247) [view usage] : c.66.1.29 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA methyltransferase AviRa |rRNA methyltransferase AviRa |Streptomyces viridochromogenes [TaxId: 1938]
d1d6ub4 : (PRO60) (GLN85) [view usage] : d.82.1.1 |N domain of copper amine oxidase-like |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Escherichia coli [TaxId: 562]
d2xhsa_ : (ASP889) (LEU907) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3fhxb_ : (LEU116) (GLU138) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xq9b_ : (GLY219) (MET248) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2kdka_ : (THR318) (LEU341) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2clta1 : (GLY368) (PHE400) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qy9d1 : (LYS2) (SER31) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein YddE |Escherichia coli [TaxId: 562]
d1eyra_ : (LYS142) (GLN163) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CMP acylneuraminate synthetase |Neisseria meningitidis [TaxId: 487]
d3ov2a2 : (ALA253) (LEU279) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Curcuma longa [TaxId: 136217]
d3fgyb_ : (ARG96) (THR129) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d2m1za_ : (GLU59) (ASP76) [view usage] : c.44.2.0 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1za7b_ : (GLY49) (SER80) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |automated matches |Cowpea chlorotic mottle virus [TaxId: 12303]
d1d6ua4 : (PRO60) (GLN85) [view usage] : d.82.1.1 |N domain of copper amine oxidase-like |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Escherichia coli [TaxId: 562]
d1i8ba2 : (ALA253) (ASN278) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Chalcone synthase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2q6db_ : (LEU27) (GLY44) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Infectious bronchitis virus [TaxId: 11120]
d2ebfx1 : (LYS792) (TYR811) [view usage] : a.296.1.1 |PMT central region-like |PMT central region-like |PMT central region-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d3iuna1 : (PRO10) (ASP36) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d3eq5b_ : (SER155) (ARG176) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2b4cg1 : (VAL292) (PHE353) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d3k6da_ : (SER1) (GLY32) [view usage] : b.1.6.0 |Immunoglobulin-like beta-sandwich |Cadherin-like |automated matches |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1dxrc_ : (TYR144) (ALA181) [view usage] : a.138.1.2 |Multiheme cytochromes |Multiheme cytochromes |Photosynthetic reaction centre (cytochrome subunit) |Photosynthetic reaction centre (cytochrome subunit) |Rhodopseudomonas viridis [TaxId: 1079]
d1khea2 : (THR92) (ARG129) [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Human (Homo sapiens) [TaxId: 9606]
d1szqa_ : (ILE403) (HIS428) [view usage] : e.44.1.1 |2-methylcitrate dehydratase PrpD |2-methylcitrate dehydratase PrpD |2-methylcitrate dehydratase PrpD |2-methylcitrate dehydratase PrpD |Escherichia coli [TaxId: 562]
d3eq5a_ : (SER155) (ARG176) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z1sa1 : (LYS96) (GLY129) [view usage] : d.17.4.10 |Cystatin-like |NTF2-like |PhzA/PhzB-like |Uncharacterized protein PA3332 |Pseudomonas aeruginosa [TaxId: 287]
d3fgya_ : (ASN95) (ALA128) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
d2jsca_ : (LEU63) (LEU89) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1o9ha_ : (LEU227) (GLU247) [view usage] : c.66.1.29 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA methyltransferase AviRa |rRNA methyltransferase AviRa |Streptomyces viridochromogenes [TaxId: 1938]
d1s68a_ : (GLY205) (GLU233) [view usage] : d.142.2.4 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |RNA ligase |RNA ligase 2, N-terminal domain |Bacteriophage T4 [TaxId: 10665]
d1huua_ : (PHE47) (LYS90) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |HU protein |Bacillus stearothermophilus [TaxId: 1422]
d1imoa_ : (THR889) (ARG916) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |DNA ligase III alpha |Human (Homo sapiens) [TaxId: 9606]
d2d7sa1 : (LYS387) (SER413) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus [TaxId: 12110]
d1hn9a2 : (LEU188) (ASN232) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
d1pz2a2 : (PRO358) (GLY383) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Alpha-L-arabinofuranosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d3ezna_ : (VAL210) (LYS236) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, d.58, b.69, i.1, c.68, b.47, d.157, c.66, c.72, c.95, b.121, c.60, b.2, d.32, b.1, a.123, d.110, d.17, c.109,
d.21, d.142, b.34, a.4, a.138, a.55, d.82, c.44, c.15, b.33, b.66, a.6, d.88, d.172, a.296, e.44