Tableau information
Concept source: d3c73b_ amino acid (a.a.) range (SER40)(LYS61)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER40) (VAL46) E1
(GLY52) (GLU56) E2
(GLU56) (LYS61) H3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -146.8° E2
H3 -123.7° 59.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3c73b_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1st9b_ : (SER39) (LYS60) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d3mznb1 : (GLY90) (LEU123) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d2h1ba_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d4hyra1 : (GLU91) (LEU124) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Acidaminococcus sp. [TaxId: 563191]
d2gfqb_ : (LEU89) (LEU127) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d4jz4a_ : (TYR90) (ALA138) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1orda2 : (ARG283) (LYS304) [view usage] : c.67.1.5 |PLP-dependent transferase-like |PLP-dependent transferases |Ornithine decarboxylase major domain |Ornithine decarboxylase major domain |Lactobacillus sp., strain 30a [TaxId: 1591]
d2edna_ : (LEU16) (PRO42) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w17b_ : (LYS66) (HIS91) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Bacillus subtilis [TaxId: 1423]
d2h3ha_ : (ASP89) (LEU119) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1vm7b_ : (VAL4) (GLU54) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Ribokinase |Thermotoga maritima [TaxId: 2336]
d3kkea_ : (ASN147) (THR169) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1fa2a_ : (GLY317) (HIS338) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Sweet potato (Ipomoea batatas) [TaxId: 4120]
d3mzna1 : (GLY90) (LEU123) [view usage] : d.54.1.0 |Enolase N-terminal domain-like |Enolase N-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d1ny1a_ : (LYS66) (ARG92) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |Probable polysaccharide deacetylase PdaA |Bacillus subtilis [TaxId: 1423]
d2h1ab_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d2c0db_ : (LYS24) (GLN51) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3cq5a_ : (ASP163) (ALA190) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Corynebacterium glutamicum
d2gfqa1 : (VAL93) (LEU127) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d3kcma_ : (ASN30) (LYS51) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2h1aa_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d1c9ya1 : (GLY162) (HIS182) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Human (Homo sapiens) [TaxId: 9606]
d2v23a_ : (LEU177) (VAL197) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1fpzc_ : (GLY50) (GLY71) [view usage] : c.45.1.1 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Dual specificity phosphatase-like |Kinase associated phosphatase (kap) |Human (Homo sapiens) [TaxId: 9606]
d1w17a_ : (LYS66) (ARG92) [view usage] : c.6.2.3 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |NodB-like polysaccharide deacetylase |automated matches |Bacillus subtilis [TaxId: 1423]
d2h19b_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d2f9sb_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d1jbha_ : (GLY6) (ASP24) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Cellular retinol-binding protein II (CRBP) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3c73a_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2h19a_ : (SER40) (LYS61) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
d3w53a_ : (THR383) (GLY415) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Micrococcus antarcticus [TaxId: 86171]
d2d69b1 : (ASP308) (LEU334) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Pyrococcus horikoshii [TaxId: 53953]
d1xxua_ : (ALA6) (ALA29) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Putative peroxiredoxin Rv2238c/MT2298 |Mycobacterium tuberculosis [TaxId: 1773]
d1o6sb_ : (SER1) (GLU31) [view usage] : b.1.6.1 |Immunoglobulin-like beta-sandwich |Cadherin-like |Cadherin |E-cadherin (epithelial) |Human (Homo sapiens) [TaxId: 9606]
d1wyta1 : (ALA199) (GLY225) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase (decarboxylating) subunit 1 |Thermus thermophilus [TaxId: 274]
d2d69e1 : (ASP308) (LEU334) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Pyrococcus horikoshii [TaxId: 53953]
d3kcmc_ : (ASN30) (LYS51) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.6, c.56, c.93, c.45, a.93, c.72, c.47, b.60, b.1, c.78, b.34, d.54