Tableau information
Concept source: d2vina_ amino acid (a.a.) range (ASP63)(HIS91)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP63) (GLY69) E1
(GLY79) (GLU84) E2
(GLU86) (HIS91) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.3° E2
E3 97.9° -73.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2nxda_ : (VAL11) (THR26) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Hiv-1 m:b_arv2/sf2 [TaxId: 11685]
d1dypa_ : (GLY124) (THR148) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |kappa-Carrageenase, catalytic |Pseudoalteromonas carrageenovora [TaxId: 227]
d3r8xa2 : (GLY272) (ALA290) [view usage] : b.46.1.0 |FMT C-terminal domain-like |FMT C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d2nspa_ : (LEU265) (ASN298) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Erwinia chrysanthemi [TaxId: 198628]
d3wwgc2 : (SER324) (VAL345) [view usage] : b.80.1.0 |Single-stranded right-handed beta-helix |Pectin lyase-like |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
d4dtea_ : (GLN179) (GLN198) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Zebrafish (Danio rerio) [TaxId: 7955]
d2qc1b_ : (ILE102) (THR133) [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4dipa_ : (GLY98) (ASN136) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nygd_ : (TYR193) (ARG220) [view usage] : c.140.1.2 |TTHA0583/YokD-like |TTHA0583/YokD-like |Aminoglycoside 3-N-acetyltransferase-like |Uncharacterized protein YokD |Bacillus subtilis [TaxId: 1423]
d1dp5a_ : (ASP87) (PRO108) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
d4fofa_ : (VAL474) (PRO493) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1xwva_ : (ASN103) (ASP129) [view usage] : b.1.18.7 |Immunoglobulin-like beta-sandwich |E set domains |ML domain |Major mite allergen |House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]
d2f2da_ : (GLY109) (ASP148) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xl4a1 : (HIS236) (GLY268) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |Inward rectifier potassium channel kirbac3.1 |Magnetospirillum magnetotacticum [TaxId: 188]
d1jx1b_ : (ALA7) (SER21) [view usage] : d.36.1.1 |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Chalcone isomerase |Alfalfa (Medicago sativa) [TaxId: 3879]
d3zpya_ : (THR294) (PRO325) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Zobellia galactanivorans [TaxId: 63186]
d1xsna3 : (GLY524) (ASN539) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2r57a1 : (GLY208) (GLY232) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2ntba_ : (LEU265) (ASN298) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |automated matches |Erwinia chrysanthemi [TaxId: 198628]
d3om2a_ : (ALA79) (ASP95) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d3q0ia2 : (MSE236) (THR255) [view usage] : b.46.1.0 |FMT C-terminal domain-like |FMT C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
d2iq7f_ : (VAL253) (ASN277) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |automated matches |Colletotrichum lupini [TaxId: 145971]
d4dqfb_ : (VAL11) (THR26) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1rqra1 : (LEU236) (TYR266) [view usage] : b.141.1.1 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |5'-fluoro-5'-deoxyadenosine synthase |Streptomyces cattleya [TaxId: 29303]
d2iq7a_ : (VAL253) (ASN277) [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |automated matches |Colletotrichum lupini [TaxId: 145971]
d1w3oa1 : (GLN84) (VAL122) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |NimA-related protein DR0842 |Deinococcus radiodurans [TaxId: 1299]
d2pnzb1 : (ASN163) (PRO186) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1sgde_ : (ASN166) (ASN184) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Protease B |Streptomyces griseus, strain k1 [TaxId: 1911]
d1wbca_ : (ASP141) (SER177) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |chymotrypsin inhibitor WCI |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d4dy7f_ : (ARG186) (SER205) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2nn6c1 : (VAL163) (SER185) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Exosome complex exonuclease RRP43 |Human (Homo sapiens) [TaxId: 9606]
d1h8va_ : (PHE197) (ILE217) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Trichoderma reesei, Cel12A [TaxId: 51453]
d3wjta_ : (ALA165) (LYS186) [view usage] : b.125.1.2 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer membrane lipoprotein receptor LolB |Outer membrane lipoprotein receptor LolB |Escherichia coli [TaxId: 562]
d3vl9a_ : (ASP47) (THR75) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d1ogmx2 : (TRP324) (ALA344) [view usage] : b.80.1.10 |Single-stranded right-handed beta-helix |Pectin lyase-like |Dextranase, catalytic domain |Dextranase, catalytic domain |Penicillium minioluteum [TaxId: 28574]
d3ihza_ : (GLU4) (GLY28) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
d3s6oc_ : (PHE196) (THR216) [view usage] : c.6.2.6 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |PA1517-like |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1r6zp1 : (LEU694) (GLU717) [view usage] : b.34.14.1 |SH3-like barrel |PAZ domain |PAZ domain |Argonaute 2 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4dy7c_ : (ARG186) (SER205) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wd3a1 : (THR89) (GLY108) [view usage] : b.29.1.21 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alpha-L-arabinofuranosidase B, N-terminal domain |Alpha-L-arabinofuranosidase B, N-terminal domain |Aspergillus kawachii [TaxId: 40384]
d4uo3a_ : (GLY286) (ARG310) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus [TaxId: 560387]
d1c0mc1 : (PRO222) (LEU240) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Rous sarcoma virus RSV [TaxId: 11886]
d1qjva_ : (LEU265) (ASN298) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Erwinia chrysanthemi [TaxId: 556]
d1pwta_ : (TRP41) (ASP61) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |alpha-Spectrin, SH3 domain |Chicken (Gallus gallus) [TaxId: 9031]
d1ls5a_ : (ASP196) (ASP214) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium falciparum, plasmepsin IV [TaxId: 5833]
d2vn1b_ : (GLU8) (GLY29) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3i2xb_ : (GLY152) (LYS179) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d2ki3a_ : (THR5) (GLU26) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
d1fmta1 : (MET235) (ASP254) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Methionyl-tRNAfmet formyltransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d1fmta1 : (GLY271) (ALA289) [view usage] : b.46.1.1 |FMT C-terminal domain-like |FMT C-terminal domain-like |Post formyltransferase domain |Methionyl-tRNAfmet formyltransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d1vp8a_ : (VAL164) (ASN187) [view usage] : c.49.1.2 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |MTH1675-like |Hypothetical protein AF0103 |Archaeoglobus fulgidus [TaxId: 2234]
d4os1a_ : (ASP63) (HIS91) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Urokinase-type plasminogen activator (LMW U-PA), catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1t57a_ : (VAL163) (PRO186) [view usage] : c.49.1.2 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |MTH1675-like |Hypothetical protein MTH1675 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1tcea_ : (HIS84) (LYS103) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Shc adaptor protein |Human (Homo sapiens) [TaxId: 9606]
d1p6pa_ : (GLU69) (GLU85) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Argentine common toad (Bufo arenarum) [TaxId: 38577]
d2d43a1 : (THR89) (GLY108) [view usage] : b.29.1.21 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Alpha-L-arabinofuranosidase B, N-terminal domain |automated matches |Aspergillus kawachii [TaxId: 40384]
d1olra_ : (GLN47) (GLN72) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Humicola grisea [TaxId: 5527]
d4jysb_ : (ASP76) (GLY96) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d1kt1a3 : (GLU212) (ALA253) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP51, N-terminal domains |Monkey (Saimiri boliviensis) [TaxId: 27679]
d4unze_ : (GLY286) (ARG310) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId: 159470]
d1csoe_ : (ASN166) (ASN184) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Protease B |Streptomyces griseus, strain k1 [TaxId: 1911]
d3r4la_ : (ARG210) (THR228) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3el9a_ : (VAL11) (THR26) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Hiv-1 m:b_arv2/sf2 [TaxId: 11685]
d2q6oa2 : (LEU208) (TYR239) [view usage] : b.141.1.0 |Bacterial fluorinating enzyme, C-terminal domain |Bacterial fluorinating enzyme, C-terminal domain |automated matches |automated matches |Salinispora tropica [TaxId: 369723]
d2ofna_ : (PHE7) (GLU28) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3gmvx_ : (TYR53) (THR77) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1jr9a2 : (SER129) (ILE160) [view usage] : d.44.1.1 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Mn superoxide dismutase (MnSOD) |Bacillus halodenitrificans [TaxId: 1482]
d2wlka2 : (HIS236) (GLY268) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |Inward rectifier potassium channel kirbac3.1 |Magnetospirillum magnetotacticum [TaxId: 188]
d1naqe_ : (ALA46) (LEU66) [view usage] : d.58.5.2 |Ferredoxin-like |GlnB-like |Divalent ion tolerance proteins CutA (CutA1) |Cut A1 |Escherichia coli [TaxId: 562]
d1miqa_ : (PHE85) (ASP107) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d3dmba_ : (VAL68) (GLU89) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d1u79a_ : (CYS5) (GLY24) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP13 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3unb3_ : (PHE187) (ALA205) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1c0ma1 : (PRO222) (LEU240) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Rous sarcoma virus RSV [TaxId: 11886]
d2fhqb_ : (ALA67) (VAL86) [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1aqba_ : (ASP102) (LEU125) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinol binding protein |Pig (Sus scrofa) [TaxId: 9823]
d3hmga_ : (GLY286) (LYS310) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza A virus, different strains [TaxId: 11320]
d2vn1a_ : (PHE7) (GLY29) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, b.19, c.6, d.58, b.29, c.140, b.67, b.47, b.50, d.153, b.60, d.14, b.1, b.45, d.110, b.96, b.125, b.42, d.98, e.1,
b.34, c.49, d.44, d.93, d.218, d.26, d.36, b.46, b.141