Tableau information
Concept source: d4q7ga_ amino acid (a.a.) range (GLY245)(ARG284)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY245) (ASN260) E1
(SER265) (ARG277) E2
(TYR278) (ARG284) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.9° E2
E3 147.2° 11.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1z9qa_ : (LEU20) (GLU66) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dr0a_ : (ARG144) (LYS159) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thermus thermophilus [TaxId: 274]
d4mzaa_ : (LEU181) (ASP200) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d1nuna_ : (ASN168) (VAL205) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Fibroblast growth factor-10, FGF10 |Human (Homo sapiens) [TaxId: 9606]
d1c12b1 : (SER95) (VAL411) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
d1b8ma_ : (GLU40) (CYS58) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |Brain-derived neurotrophic factor, BDNF |Human (Homo sapiens) [TaxId: 9606]
d1xb9a_ : (PRO99) (LEU121) [view usage] : b.121.3.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Nucleoplasmin-like core domain |Nucleoplasmin-like core domain |Nucleophosmin (NO38) |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1jeya1 : (ARG258) (LYS282) [view usage] : b.131.1.1 |SPOC domain-like |SPOC domain-like |Ku70 subunit middle domain |Ku70 subunit middle domain |Human (Homo sapiens) [TaxId: 9606]
d1f5ja_ : (CYS178) (SER198) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Xylanase II |Dictyoglomus thermophilum [TaxId: 14]
d1i4va_ : (PRO116) (LYS136) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |UmuD' |Escherichia coli [TaxId: 562]
d3b07b_ : (ILE80) (PRO96) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d4jbea_ : (ARG98) (TYR125) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Saccharomonospora viridis [TaxId: 471857]
d1nlta2 : (MET316) (PRO336) [view usage] : b.4.1.1 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2nrcb2 : (LYS146) (ASP167) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2y42d_ : (ARG144) (LYS159) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Thermus thermophilus [TaxId: 274]
d2ab1a1 : (ALA7) (PRO30) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein PTD015 (C11orf67) |Human (Homo sapiens) [TaxId: 9606]
d1v2ia_ : (LEU181) (ASP200) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Hemagglutinin-neuraminidase glycoprotein |Human parainfluenza virus type 3 [TaxId: 11216]
d1kv7a2 : (VAL283) (SER301) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1p8ja1 : (GLY545) (GLY577) [view usage] : b.18.1.20 |Galactose-binding domain-like |Galactose-binding domain-like |Proprotein convertase P-domain |Furin, C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d4p8sa_ : (CYS35) (LEU67) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2aowa_ : (SER272) (ILE290) [view usage] : c.66.1.19 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Histamine methyltransferase |Histamine methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d4o9ga_ : (LYS34) (LYS55) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d4b8ra_ : (GLY423) (SER442) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Thermococcus litoralis [TaxId: 2265]
d1xwdc1 : (ILE22) (LEU55) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Follicle-stimulating hormone receptor |Human (Homo sapiens) [TaxId: 9606]
d4i88a_ : (ASP67) (GLU90) [view usage] : b.15.1.1 |HSP20-like chaperones |HSP20-like chaperones |HSP20 |Small heat shock protein |Methanococcus jannaschii [TaxId: 2190]
d1qnzl_ : (SER26) (PRO44) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 2 [TaxId: 10090]
d4p91a_ : (CYS35) (LEU67) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1bxea_ : (LEU82) (GLY108) [view usage] : d.55.1.1 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Ribosomal protein L22 |Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]
d1t3ta5 : (MET781) (ARG807) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |FGAM synthase PurL, PurM-like module, N1 and N2 domains |Salmonella typhimurium [TaxId: 90371]
d4ca4a_ : (ILE42) (GLY65) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |Mannose-specific adhesin FimH |Escherichia coli [TaxId: 562]
d1ddta1 : (GLN387) (GLY409) [view usage] : b.2.1.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Diphtheria toxin, C-terminal domain |Diphtheria toxin, C-terminal domain |Diphtheria toxin, C-terminal domain |Corynebacterium diphtheriae [TaxId: 1717]
d2glua1 : (CYS204) (LYS227) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d3vlaa_ : (PRO328) (ASN353) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d3wo9a_ : (CYS37) (LEU73) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Lethenteron camtschaticum [TaxId: 980415]
d1xbpp1 : (TYR74) (ILE98) [view usage] : b.155.1.1 |L21p-like |L21p-like |Ribosomal protein L21p |Ribosomal protein L21p |Deinococcus radiodurans [TaxId: 1299]
d1xxla_ : (CYS204) (LYS227) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein YcgJ |Bacillus subtilis [TaxId: 1423]
d1peua2 : (SER396) (ASN421) [view usage] : c.7.1.2 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |R1 subunit of ribonucleotide reductase, C-terminal domain |R1 subunit of ribonucleotide reductase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1gc5a_ : (GLY423) (ALA441) [view usage] : c.72.1.3 |Ribokinase-like |Ribokinase-like |ADP-specific Phosphofructokinase/Glucokinase |ADP-dependent glucokinase |Thermococcus litoralis [TaxId: 2265]
d2jxmb1 : (GLY210) (GLN246) [view usage] : i.4.1.1 |Electron transport chains |Electron transport chains |Electron transport chains |Cytochrome f-plastocyanin complex |Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]
d4o9ea_ : (LYS34) (LYS55) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1xcda_ : (ARG28) (LEU59) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |Decorin |Cow (Bos taurus) [TaxId: 9913]
d4b8sa_ : (GLY423) (SER442) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Thermococcus litoralis [TaxId: 2265]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.10, b.82, b.29, c.82, c.66, c.77, c.124, b.50, c.72, c.7, b.18, b.121, b.2, b.6, b.1, b.42, d.79, b.34, b.87,
b.15, g.17, f.6, c.103, b.131, b.4, i.4, d.55, b.155