Tableau information
Concept source: d1i5zb2 amino acid (a.a.) range (LEU29)(GLU54)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU29) (GLY33) E1
(THR38) (ILE42) E2
(GLY45) (GLU54) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -141.6° E2
E3 -27.2° -126.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3vxia_ : (ILE173) (PRO193) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d1bjoa_ : (TYR145) (ALA173) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Phosphoserine aminotransferase, PSAT |Escherichia coli [TaxId: 562]
d2dtge5 : (GLU362) (GLY390) [view usage] : c.10.2.5 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |L domain |Insulin receptor |Human (Homo sapiens) [TaxId: 9606]
d1qo0b_ : (ALA100) (GLY120) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d3e6da1 : (LEU75) (ALA98) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d1m0zb_ : (TYR185) (ASN210) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |von Willebrand factor binding domain of glycoprotein Ib alpha |Human (Homo sapiens) [TaxId: 9606]
d2tuna_ : (LYS11) (ASP45) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d1byka_ : (SER141) (ASP158) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Trehalose repressor, C-terminal domain |Escherichia coli [TaxId: 562]
d2bw8a_ : (THR30) (ILE62) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d4eqya_ : (ALA9) (GLY30) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d3d98a2 : (VAL264) (GLY281) [view usage] : b.81.1.4 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |GlmU C-terminal domain-like |N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
d2g0ya_ : (ALA7) (ASN31) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |Lumenal RFR-domain protein |Cyanothece sp. atcc 51142 [TaxId: 43989]
d2g0ya_ : (ASN31) (GLY56) [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |Lumenal RFR-domain protein |Cyanothece sp. atcc 51142 [TaxId: 43989]
d1s1io_ : (THR86) (ALA108) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4kdza_ : (GLN73) (GLY100) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |automated matches |Escherichia coli [TaxId: 364106]
d1bwuq_ : (ASN2) (VAL18) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Lectin (agglutinin) |Garlic (Allium sativum) [TaxId: 4682]
d1iqaa_ : (GLN162) (ASN202) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |TRANCE/RANKL cytokine |Mouse (Mus musculus) [TaxId: 10090]
d4jaka_ : (GLN73) (GLY100) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3kwda_ : (LEU17) (GLY36) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1gqfa_ : (LYS276) (THR333) [view usage] : c.17.1.1 |Caspase-like |Caspase-like |Caspase catalytic domain |Caspase-7 |Human (Homo sapiens) [TaxId: 9606]
d1duja_ : (CYS151) (SER197) [view usage] : d.135.1.1 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |Human (Homo sapiens) [TaxId: 9606]
d1qo0a_ : (ALA100) (GLY120) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d2dbya2 : (TRP346) (PHE366) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1r45a_ : (GLY171) (ILE202) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Exoenzyme c3 |Clostridium botulinum C bacteriophage [TaxId: 12336]
d3mx6a_ : (LYS177) (ASN205) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d2dwqa2 : (TRP346) (PHE366) [view usage] : d.15.10.0 |beta-Grasp (ubiquitin-like) |TGS-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3ioha_ : (ARG146) (VAL172) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |Glycosyltransferase A catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d4qmaa_ : (GLY134) (GLY165) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |Cysteine dioxygenase type I |Ralstonia eutropha [TaxId: 106590]
d2vfoa_ : (ASN520) (GLY544) [view usage] : b.80.1.6 |Single-stranded right-handed beta-helix |Pectin lyase-like |P22 tailspike protein |P22 tailspike protein |Salmonella phage P22 [TaxId: 10754]
d3mm1a_ : (ILE173) (PRO193) [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Decolorizing peroxidase DyP |Bjerkandera adusta [TaxId: 5331]
d4czea1 : (ALA14) (ARG42) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d1j85a_ : (LYS73) (GLY100) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) |Haemophilus influenzae [TaxId: 727]
d1vbwa_ : (ARG30) (VAL55) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |automated matches |Bitter gourd (Momordica charantia) [TaxId: 3673]
d2iksa_ : (PHE142) (VAL160) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1xd5c_ : (ASP2) (GLU18) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Gastrodianin (antifungal protein) |Gastrodia elata [TaxId: 91201]
d1ea0a1 : (GLY1270) (ASP1294) [view usage] : b.80.4.1 |Single-stranded right-handed beta-helix |Alpha subunit of glutamate synthase, C-terminal domain |Alpha subunit of glutamate synthase, C-terminal domain |Alpha subunit of glutamate synthase, C-terminal domain |Azospirillum brasilense [TaxId: 192]
d1h0ba_ : (THR30) (ILE62) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Rhodothermus marinus [TaxId: 29549]
d1r8ka_ : (PRO53) (LEU76) [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |4-hydroxythreonine-4-phosphate dehydrogenase PdxA |Salmonella typhimurium [TaxId: 90371]
d2f9ca1 : (ASP300) (ARG319) [view usage] : b.81.1.7 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |YdcK-like |Hypothetical protein YdcK |Salmonella enterica [TaxId: 28901]
d3mx6b_ : (PRO178) (ASN205) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d1cyga3 : (THR464) (THR491) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Cyclodextrin glycosyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d2ersa1 : (SER53) (TRP86) [view usage] : g.18.1.1 |Complement control module/SCR domain |Complement control module/SCR domain |Complement control module/SCR domain |Interleukin-15 receptor subunit alpha |Human (Homo sapiens) [TaxId: 9606]
d1r8kb_ : (PRO53) (LEU76) [view usage] : c.77.1.3 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |PdxA-like |4-hydroxythreonine-4-phosphate dehydrogenase PdxA |Salmonella typhimurium [TaxId: 90371]
d2gkoa_ : (ALA185) (ILE226) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus subtilis [TaxId: 1423]
d2vfpa_ : (ASN520) (GLY544) [view usage] : b.80.1.6 |Single-stranded right-handed beta-helix |Pectin lyase-like |P22 tailspike protein |P22 tailspike protein |Salmonella phage P22 [TaxId: 10754]
d2ixta_ : (ALA186) (ILE227) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus sphaericus [TaxId: 1421]
d2biea1 : (LEU145) (MET173) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Phosphoserine aminotransferase, PSAT |Bacillus alcalophilus [TaxId: 1445]
d1t0ba_ : (PRO145) (PHE173) [view usage] : c.23.16.6 |Flavodoxin-like |Class I glutamine amidotransferase-like |ThuA-like |GK2113 homologue |Bacillus stearothermophilus [TaxId: 1422]
d1gq8a_ : (SER231) (GLN267) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Carrot (Daucus carota) [TaxId: 4039]
d3mezd_ : (PRO3) (ASP17) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Crocus vernus [TaxId: 87752]
d1a2oa2 : (GLY217) (LEU236) [view usage] : c.40.1.1 |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Methylesterase CheB, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.10, b.82, c.67, b.81, d.58, i.1, c.68, b.29, c.77, c.93, c.23, c.55, d.166, d.127, c.41, c.116, b.22, d.15, b.71,
g.18, c.17, c.40, b.78, d.135, d.40