Tableau information
Concept source: d1e8tb_ amino acid (a.a.) range (ARG485)(SER508)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG485) (GLY489) E1
(ASN500) (ALA504) E2
(ALA504) (SER508) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -147.5° E2
E3 142.6° -67.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgqx_ : (VAL4) (SER32) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d2bdwa_ : (PHE24) (ASN45) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1is3a_ : (LEU120) (GLU135) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |Congerin II |Conger eel (Conger myriaster) [TaxId: 7943]
d2moqa_ : (LYS232) (PHE256) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d1cpma_ : (LEU144) (GLY179) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Bacillus macerans [TaxId: 44252]
d3sika_ : (TYR38) (LYS68) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1e54a_ : (SER2) (SER32) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Comamonas acidovorans [TaxId: 80866]
d3n35a_ : (GLU206) (PRO238) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Coral tree (Erythrina corallodendron) [TaxId: 3843]
d3zvxa_ : (GLU218) (LEU246) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d2e55a_ : (LEU47) (GLU68) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d2gina_ : (SER111) (GLN133) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |Allene oxide cyclase, AOC |Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
d1s1qc_ : (LYS36) (THR58) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d3az8f_ : (ILE204) (ALA227) [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2fgra_ : (VAL4) (SER32) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d1a8ha2 : (GLY120) (GLY157) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Methionyl-tRNA synthetase (MetRS) |Thermus thermophilus [TaxId: 274]
d3nqyb_ : (ALA205) (SER231) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Pseudoalteromonas sp. [TaxId: 234831]
d4njta_ : (GLY52) (GLY78) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus 1 [TaxId: 11676]
d1crza1 : (THR144) (ASP165) [view usage] : b.68.4.1 |6-bladed beta-propeller |TolB, C-terminal domain |TolB, C-terminal domain |TolB, C-terminal domain |Escherichia coli [TaxId: 562]
d2gska_ : (ASP515) (PRO554) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d2gska_ : (HIS558) (PHE594) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane cobalamin transporter BtuB |Escherichia coli [TaxId: 562]
d1gz9a_ : (ASP206) (PRO238) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]
d1iz1a2 : (ARG147) (LEU167) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d2vyta1 : (GLY66) (GLY87) [view usage] : b.34.9.3 |SH3-like barrel |Tudor/PWWP/MBT |MBT repeat |Scml2 protein |Human (Homo sapiens) [TaxId: 9606]
d2bivc1 : (GLY66) (GLY87) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ot5a1 : (TRP568) (LEU590) [view usage] : b.18.1.20 |Galactose-binding domain-like |Galactose-binding domain-like |Proprotein convertase P-domain |Kexin, C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mvea_ : (LEU159) (TRP203) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Fibrobacter succinogenes [TaxId: 833]
d2k78a_ : (ASP114) (GLY144) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 196620]
d3ppsa2 : (GLY285) (TYR312) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Thielavia arenaria [TaxId: 113610]
d2ymza_ : (SER115) (GLU131) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d3zyra_ : (GLU218) (LEU246) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Platypodium elegans [TaxId: 115002]
d3jwnh1 : (ASN23) (SER39) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 488477]
d2ywja_ : (ASP109) (ARG129) [view usage] : c.23.16.0 |Flavodoxin-like |Class I glutamine amidotransferase-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1j0ma3 : (THR594) (ILE629) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Xanthan lyase |Bacillus sp. GL1 [TaxId: 84635]
d2e24a3 : (GLY591) (ILE629) [view usage] : b.30.5.0 |Supersandwich |Galactose mutarotase-like |automated matches |automated matches |Bacillus sp. [TaxId: 84635]
d3e11a1 : (LEU45) (ASN73) [view usage] : d.92.1.17 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TTHA0227-like |Uncharacterized protein Acel_2062 |Acidothermus cellulolyticus [TaxId: 28049]
d1z8ka1 : (SER116) (GLN138) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |Allene oxide cyclase, AOC |Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
d1ax0a_ : (GLU206) (PRO238) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Coral tree (Erythrina corallodendron) [TaxId: 3843]
d1u20b_ : (LYS33) (ARG63) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2i0ka2 : (ASP69) (LYS95) [view usage] : d.145.1.0 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |automated matches |automated matches |Brevibacterium sterolicum [TaxId: 1702]
d2owba_ : (PHE64) (PRO85) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4u7ja2 : (ARG255) (PRO275) [view usage] : d.210.1.0 |Argininosuccinate synthetase, C-terminal domain |Argininosuccinate synthetase, C-terminal domain |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1078020]
d1sfya_ : (GLU206) (PRO238) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Coral tree (Erythrina corallodendron) [TaxId: 3843]
d4h6ba_ : (SER113) (GLN135) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |automated matches |Physcomitrella patens [TaxId: 3218]
d1lhoa_ : (PRO137) (LEU171) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Sex hormone-binding globulin |Human (Homo sapiens) [TaxId: 9606]
d3sbea_ : (ASP38) (ALA59) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gw0a2 : (ASP284) (TYR312) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d1uzza_ : (GLU206) (PRO238) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]
d1ys5a1 : (GLY137) (GLN156) [view usage] : f.4.1.3 |Transmembrane beta-barrels |OMPA-like |GNA1870 immunodominant domain-like |Lipoprotein GNA1870 immunodominant domain |Neisseria meningitidis [TaxId: 487]
d1ow3b_ : (GLU40) (ALA61) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |RhoA |Human (Homo sapiens) [TaxId: 9606]
d1ccva_ : (ASN6) (GLY41) [view usage] : g.22.1.1 |Serine protease inhibitors |Serine protease inhibitors |ATI-like |Chymotrypsin inhibitor AMCI |Honeybee (Apis mellifera) [TaxId: 7460]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.94, b.29, c.26, b.30, d.92, b.50, c.23, f.4, d.144, c.37, b.18, b.2, b.6, b.1, d.20, d.38, c.61, b.34, d.145,
d.113, b.159, d.210, g.22