Tableau information
Concept source: d1fo6a_ amino acid (a.a.) range (ALA97)(ASP116)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA97) (VAL101) E1
(LYS106) (ASN110) E2
(ASN110) (ASP116) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.3° E2
E3 99.1° 66.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1kzwa_ : (ASN69) (LEU84) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1gmma_ : (ASP110) (ASP127) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Carbohydrate binding module from xylanase U |Clostridium thermocellum [TaxId: 1515]
d2xyaa_ : (GLY117) (SER139) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human rhinovirus sp. [TaxId: 169066]
d2v4va_ : (ASP1028) (PHE1048) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium cellulolyticum [TaxId: 1521]
d1vbka2 : (ASP149) (TRP171) [view usage] : d.308.1.1 |THUMP domain |THUMP domain-like |THUMP domain |Hypothetical protein PH1313, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d4ddda_ : (LYS239) (LEU262) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
d4af2a_ : (MET1) (ALA21) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Escherichia coli [TaxId: 562]
d1k3ba_ : (MET98) (GLY119) [view usage] : b.61.5.1 |Streptavidin-like |Dipeptidyl peptidase I (cathepsin C), exclusion domain |Dipeptidyl peptidase I (cathepsin C), exclusion domain |Dipeptidyl peptidase I (cathepsin C), exclusion domain |Human (Homo sapiens) [TaxId: 9606]
d1dpca_ : (GLN588) (ASP609) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide acetyltransferase |Azotobacter vinelandii [TaxId: 354]
d1o8sa_ : (ASP130) (LYS148) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Putative xylanase |Clostridium stercorarium [TaxId: 1510]
d4cdfa_ : (MET98) (THR120) [view usage] : b.61.5.1 |Streptavidin-like |Dipeptidyl peptidase I (cathepsin C), exclusion domain |Dipeptidyl peptidase I (cathepsin C), exclusion domain |Dipeptidyl peptidase I (cathepsin C), exclusion domain |Human (Homo sapiens) [TaxId: 9606]
d1a9xb1 : (LYS1503) (GLY1521) [view usage] : c.8.3.1 |The "swivelling" beta/beta/alpha domain |Carbamoyl phosphate synthetase, small subunit N-terminal domain |Carbamoyl phosphate synthetase, small subunit N-terminal domain |Carbamoyl phosphate synthetase, small subunit N-terminal domain |Escherichia coli [TaxId: 562]
d2gixa_ : (LYS233) (ASP249) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3bdia_ : (ALA2) (SER24) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 273075]
d1pm1x_ : (SER114) (HIS138) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 2 (prolixin-s) |Rhodnius prolixus [TaxId: 13249]
d1uxxx_ : (ASP110) (ASP127) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Carbohydrate binding module from xylanase U |Clostridium thermocellum [TaxId: 1515]
d2xpdc_ : (THR0) (ILE21) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d1pl3a_ : (SER4) (VAL22) [view usage] : b.1.9.1 |Immunoglobulin-like beta-sandwich |CBD9-like |Cytochrome domain of cellobiose dehydrogenase |Cytochrome domain of cellobiose dehydrogenase |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d1s3sf1 : (VAL57) (ASP75) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |Membrane fusion ATPase p97 N-terminal domain , P97-Nn |Mouse (Mus musculus) [TaxId: 10090]
d2xpdf_ : (THR2) (ILE21) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d2i8ta_ : (TRP86) (PHE110) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |automated matches |Escherichia coli [TaxId: 562]
d1dpda_ : (GLN588) (ASP609) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Dihydrolipoamide acetyltransferase |Azotobacter vinelandii [TaxId: 354]
d1usza_ : (ILE41) (LEU72) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d1efca3 : (PRO53) (PRO72) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d1ploa_ : (VAL60) (LYS82) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1u4fa_ : (LYS233) (ASP249) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2i9bf2 : (SER0) (LEU19) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d1w94a1 : (ALA129) (GLY154) [view usage] : c.51.1.2 |Anticodon-binding domain-like |Class II aaRS ABD-related |Brix domain |Probable ribosomal biogenesis protein |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1d2ea3 : (PRO99) (ALA118) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Cow (Bos taurus), mitochondrial [TaxId: 9913]
d1bf5a2 : (GLU429) (SER459) [view usage] : b.2.5.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |STAT DNA-binding domain |STAT-1, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1jjub_ : (SER101) (ASP121) [view usage] : b.69.2.2 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Quinohemoprotein amine dehydrogenase B chain |Quinohemoprotein amine dehydrogenase B chain |Paracoccus denitrificans [TaxId: 266]
d2p0ra_ : (GLY129) (PHE153) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Human (Homo sapiens) [TaxId: 9606]
d1d8tb3 : (PRO53) (PRO72) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Escherichia coli [TaxId: 562]
d2i8tb_ : (TRP86) (PHE110) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |automated matches |Escherichia coli [TaxId: 562]
d3vlaa_ : (LEU212) (GLY240) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d4i6ba_ : (GLU98) (HIS115) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xpdb_ : (MET1) (ILE21) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d1vpaa_ : (ASP134) (PRO158) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Thermotoga maritima [TaxId: 2336]
d4b9fa_ : (ASP56) (SER83) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Cellusomal scaffolding protein A, scaffoldin |Clostridium thermocellum [TaxId: 203119]
d1qa7a_ : (ARG115) (GLU139) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d1xbra_ : (HIS162) (THR194) [view usage] : b.2.5.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |T-box |T domain from Brachyury transcription factor |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1vpab_ : (ALA135) (PRO158) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) |Thermotoga maritima [TaxId: 2336]
d2ik6b_ : (GLN98) (GLY125) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1w9sa_ : (ASP117) (ALA140) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Hypothetical protein BH0236 |Bacillus halodurans [TaxId: 86665]
d4doia_ : (THR17) (SER32) [view usage] : d.36.1.0 |Chalcone isomerase |Chalcone isomerase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4doib_ : (THR1017) (SER1032) [view usage] : d.36.1.0 |Chalcone isomerase |Chalcone isomerase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1tl9a_ : (GLY147) (LYS171) [view usage] : d.3.1.3 |Cysteine proteinases |Cysteine proteinases |Calpain large subunit, catalytic domain (domain II) |Calpain large subunit, catalytic domain (domain II) |Norway rat (Rattus norvegicus), mu-type [TaxId: 10116]
d1y88a2 : (ASN25) (ASP44) [view usage] : c.52.1.30 |Restriction endonuclease-like |Restriction endonuclease-like |MRR-like |Hypothetical protein AF1548, N-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1qcsa1 : (HIS34) (PRO53) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |N-terminal domain of NSF-N, NSF-Nn |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d1zj8a3 : (GLU491) (THR517) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d1tuia3 : (PRO54) (ALA73) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor Tu (EF-Tu), N-terminal (G) domain |Thermus aquaticus [TaxId: 271]
d1mvga_ : (ALA68) (ASN86) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver basic fatty acid binding protein, LB_FABP |Chicken (Gallus gallus) [TaxId: 9031]
d1ogya1 : (GLU737) (ARG754) [view usage] : b.52.2.2 |Double psi beta-barrel |ADC-like |Formate dehydrogenase/DMSO reductase, C-terminal domain |Periplasmic nitrate reductase alpha chain, NapA |Rhodobacter sphaeroides [TaxId: 1063]
d1olqa_ : (PHE197) (ILE217) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Trichoderma reesei, Cel12A [TaxId: 51453]
d2xpda_ : (THR2) (ILE21) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d4gvra_ : (GLY96) (GLY110) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d3qq8a1 : (VAL57) (ASP75) [view usage] : b.52.2.3 |Double psi beta-barrel |ADC-like |Cdc48 N-terminal domain-like |Membrane fusion ATPase p97 N-terminal domain , P97-Nn |Human (Homo sapiens) [TaxId: 9606]
d1bjga_ : (THR16) (GLY31) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d4bfld1 : (HIS275) (PRO295) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase II |Escherichia coli, HPII [TaxId: 562]
d2gixb_ : (LYS233) (ASP249) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.5, c.69, c.94, b.69, c.68, b.29, b.47, d.117, b.50, d.144, b.40, c.37, c.47, b.60, b.18, d.3, b.2, d.160, b.1, c.43,
c.8, c.51, b.52, d.134, c.52, b.61, d.113, d.308, g.7, d.36, d.147