Tableau information
Concept source: d3sgjb1 amino acid (a.a.) range (PRO271)(TYR296)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO271) (TRP277) E1
(VAL282) (ASN286) E2
(ALA287) (TYR296) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 118.7° E2
E3 150.4° -70.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4jgma_ : (VAL353) (PRO377) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1w2ta2 : (GLY13) (ARG37) [view usage] : b.67.2.3 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Glycosyl hydrolases family 32 N-terminal domain |automated matches |Thermotoga maritima [TaxId: 243274]
d2qf2a2 : (VAL360) (SER385) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ti2b1 : (LYS196) (SER219) [view usage] : b.3.5.1 |Prealbumin-like |Cna protein B-type domain |Cna protein B-type domain |Transhydroxylase beta subunit, BthL, C-terminal domain |Pelobacter acidigallici [TaxId: 35816]
d3skje_ : (GLU93) (PRO123) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hq0a_ : (ASN985) (LYS1013) [view usage] : d.194.1.1 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |Type 1 cytotoxic necrotizing factor, catalytic domain |Type 1 cytotoxic necrotizing factor, catalytic domain |Escherichia coli [TaxId: 562]
d1g8la1 : (ASN381) (ASN405) [view usage] : b.85.6.1 |beta-clip |MoeA C-terminal domain-like |MoeA C-terminal domain-like |Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain |Escherichia coli [TaxId: 562]
d1ylna1 : (LEU184) (LYS205) [view usage] : b.45.2.1 |Split barrel-like |PilZ domain-like |PilZ domain |Hypothetical protein VCA0042, C-terminal domain |Vibrio cholerae [TaxId: 666]
d1p7gh2 : (LEU144) (LEU172) [view usage] : d.44.1.1 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe superoxide dismutase (FeSOD) |Pyrobaculum aerophilum [TaxId: 13773]
d1cf1d1 : (PHE147) (HIS179) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), visual arrestin [TaxId: 9913]
d3mofa2 : (VAL360) (SER385) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1z2ma2 : (TRP123) (LEU152) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Interferon-induced 15 kDa protein |Human (Homo sapiens) [TaxId: 9606]
d1i6va2 : (LEU85) (ASN124) [view usage] : d.181.1.1 |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |RNA polymerase alpha subunit |Thermus aquaticus [TaxId: 271]
d4cmma_ : (GLY87) (ALA116) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1stma_ : (ILE122) (PRO151) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |SPMV coat protein |Satellite panicum mosaic virus [TaxId: 154834]
d2z9ha_ : (MET26) (VAL42) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d2chda_ : (ARG465) (SER490) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3dhgc_ : (VAL49) (PHE82) [view usage] : d.15.12.0 |beta-Grasp (ubiquitin-like) |TmoB-like |automated matches |automated matches |Pseudomonas mendocina [TaxId: 300]
d2faha2 : (VAL379) (SER404) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d3ejva1 : (GLY131) (HIS153) [view usage] : d.17.4.28 |Cystatin-like |NTF2-like |BaiE/LinA-like |Uncharacterized protein Saro2766 |Novosphingobium aromaticivorans [TaxId: 48935]
d1tiha_ : (GLY13) (PRO51) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Multidomain proteinase inhibitor |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d3kcpb_ : (GLY580) (PRO599) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium thermocellum [TaxId: 203119]
d1vkda_ : (PHE183) (LEU200) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d1zkaa_ : (VAL353) (PRO377) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3u87a_ : (TYR39) (THR60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d1v1pb1 : (GLN83) (LYS106) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Exotoxin 1 (SET1, Superantigen-like protein 7) |Staphylococcus aureus [TaxId: 1280]
d1qwka_ : (ARG209) (PRO226) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Hypothetical protein C07D8.6 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1w8xg_ : (PHE274) (PHE291) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
d1kaca_ : (ASN555) (ILE584) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d2vkdb_ : (ILE375) (SER389) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |automated matches |Clostridium sordellii [TaxId: 1505]
d2zjwa_ : (ASP38) (THR60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hqma_ : (LEU85) (ASN123) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d1fbub_ : (GLN261) (ASN280) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d2rdhb1 : (ASN64) (THR89) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1fbqa_ : (GLN261) (ASN280) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d2v58a2 : (ALA272) (ARG292) [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Biotin carboxylase (BC), domain 2 |Escherichia coli [TaxId: 562]
d2butb1 : (ARG377) (GLN401) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Protocatechuate-3,4-dioxygenase, beta chain |Acinetobacter calcoaceticus, adp1 [TaxId: 471]
d4fl4b_ : (GLY158) (PRO177) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d4hokm_ : (ASN123) (ARG157) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2asnx_ : (LYS63) (ASP89) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 2 (prolixin-s) |Rhodnius prolixus [TaxId: 13249]
d3srza_ : (LEU370) (SER388) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3tt0a_ : (LEU478) (GLY499) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Fibroblast growth factor receptor 1 |Human (Homo sapiens) [TaxId: 9606]
d1c1yb_ : (CYS96) (PHE130) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Human (Homo sapiens) [TaxId: 9606]
d4dwfa_ : (GLN57) (GLU86) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vkxb1 : (LYS623) (PRO649) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |p50 subunit of NF-kappa B transcription factor |Mouse (Mus musculus) [TaxId: 10090]
d3r2ia1 : (GLY100) (LYS124) [view usage] : b.40.2.0 |OB-fold |Bacterial enterotoxins |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d4jcma4 : (SER575) (ASP626) [view usage] : b.3.1.0 |Prealbumin-like |Starch-binding domain-like |automated matches |automated matches |Bacillus clarkii [TaxId: 79879]
d2vqda2 : (ALA272) (ARG292) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3gzxb_ : (GLN142) (LEU172) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |automated matches |Comamonas testosteroni [TaxId: 285]
d2qhlc_ : (GLY55) (ASN72) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Ictalurus punctatus [TaxId: 7998]
d4a17c_ : (THR2) (THR24) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1ynja2 : (LEU85) (ASN124) [view usage] : d.181.1.1 |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |Insert subdomain of RNA polymerase alpha subunit |RNA polymerase alpha subunit |Thermus aquaticus [TaxId: 271]
d1fbqb_ : (GLN261) (ASN280) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |Heat-shock transcription factor |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d4lt7a_ : (ARG465) (SER490) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1laba_ : (LEU56) (PRO78) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |Lipoyl domain of dihydrolipoamide acetyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d2b4cg1 : (GLY222) (GLN246) [view usage] : d.172.1.1 |gp120 core |gp120 core |gp120 core |gp120 core |Human immunodeficiency virus type 1 [TaxId: 11676]
d1lm0a_ : (ILE110) (ASP132) [view usage] : b.40.9.1 |OB-fold |Heme chaperone CcmE |Heme chaperone CcmE |Heme chaperone CcmE |Shewanella putrefaciens [TaxId: 24]
d2bm3a1 : (GLY146) (PRO165) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |Scaffolding dockerin binding protein A, SdbA |Clostridium thermocellum [TaxId: 1515]
d3ulja_ : (GLU84) (GLY104) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Xenopus (Silurana) tropicalis [TaxId: 8364]
d1n4oa_ : (SER160) (THR182) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Stenotrophomonas maltophilia, L2 [TaxId: 40324]
d3am2a2 : (GLU126) (ASP169) [view usage] : f.8.1.3 |Aerolisin/ETX pore-forming domain |Aerolisin/ETX pore-forming domain |Clostridium perfringens enterotoxin (CPE), pore-forming domain |Clostridium perfringens enterotoxin (CPE), pore-forming domain |Clostridium perfringens [TaxId: 1502]
d3tjta2 : (LEU162) (ILE190) [view usage] : d.44.1.0 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3nrma_ : (ASP132) (GLN154) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Aurora-related kinase 1 (aurora-2) |Human (Homo sapiens) [TaxId: 9606]
d1yc61_ : (ASN151) (GLU174) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |BMV (Brome mosaic virus) [TaxId: 12302]
d1dlma_ : (THR133) (HIS157) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Catechol 1,2-dioxygenase |Acinetobacter calcoaceticus [TaxId: 471]
d2gskb_ : (ARG212) (PHE230) [view usage] : d.212.1.2 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TonB |TonB |Escherichia coli [TaxId: 562]
d1uf0a_ : (ARG60) (SER87) [view usage] : d.15.11.1 |beta-Grasp (ubiquitin-like) |Doublecortin (DC) |Doublecortin (DC) |Doublecortin-like kinase Dclk |Human (Homo sapiens) [TaxId: 9606]
d2ixqb1 : (GLY82) (VAL100) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d3do7a2 : (VAL353) (PRO377) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1vkde_ : (PHE183) (LEU200) [view usage] : b.67.2.4 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |TM1225-like predicted glycosylases |Hypothetical protein TM1225 |Thermotoga maritima [TaxId: 2336]
d1jwhb_ : (ASP38) (THR60) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d1p69a_ : (ASN555) (ILE584) [view usage] : b.21.1.1 |Virus attachment protein globular domain |Virus attachment protein globular domain |Adenovirus fiber protein "knob" domain |Adenovirus fiber protein "knob" domain |Human adenovirus type 12 [TaxId: 28282]
d4r3fa_ : (LEU124) (GLY162) [view usage] : b.62.1.0 |Cyclophilin-like |Cyclophilin-like |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d2l05a_ : (CYS195) (VAL226) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kucb_ : (CYS96) (PHE130) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Human (Homo sapiens) [TaxId: 9606]
d2gtia2 : (ASN290) (ASN312) [view usage] : d.294.1.2 |EndoU-like |EndoU-like |Nsp15 C-terminal domain-like |Nsp15, C-terminal domain |Murine hepatitis virus, MHV [TaxId: 11138]
d1rz8a2 : (ALA144) (GLU165) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Human (Homo sapiens) [TaxId: 9606]
d2xzmw_ : (ASP160) (LEU177) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2l5ta_ : (MET1) (VAL23) [view usage] : b.84.1.1 |Barrel-sandwich hybrid |Single hybrid motif |Biotinyl/lipoyl-carrier proteins and domains |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d2qhla_ : (GLY55) (ASN72) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Ictalurus punctatus [TaxId: 7998]
d2ayja1 : (VAL16) (LYS47) [view usage] : g.41.8.7 |Rubredoxin-like |Zn-binding ribosomal proteins |Ribosomal protein L40e |Ribosomal protein L40e |Sulfolobus solfataricus [TaxId: 2287]
d2vpqa2 : (ALA270) (ARG292) [view usage] : d.142.1.0 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, i.1, c.68, b.67, i.6, d.144, b.40, b.60, b.18, d.194, b.121, b.2, b.85, b.1, b.45, d.17, b.62, b.84, b.21,
d.142, a.4, c.91, d.44, d.15, b.7, b.3, i.8, f.8, g.41, d.181, g.69, d.172, d.294, d.212