Tableau information
Concept source: d1qmea4 amino acid (a.a.) range (GLU357)(ASP373)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU357) (SER362) E1
(SER362) (ALA367) E2
(ASP368) (ASP373) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 80.6° E2
E3 -110.5° 154.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2efga1 : (ARG348) (GLU367) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor G (EF-G), domain II |Thermus thermophilus [TaxId: 274]
d2gu2a1 : (LYS252) (LEU271) [view usage] : c.56.5.7 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |AstE/AspA-like |Aspartoacylase AspA |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3pt6b4 : (ASP1084) (ASP1101) [view usage] : b.34.12.1 |SH3-like barrel |BAH domain |BAH domain |BAH domains from DNA methyltransferase 1 (DNMT1) |Mouse (Mus musculus) [TaxId: 10090]
d1soua_ : (ALA164) (ARG182) [view usage] : c.124.1.6 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |Methenyltetrahydrofolate synthetase |Hypothetical protein aq_1731 |Aquifex aeolicus [TaxId: 63363]
d1fx5b_ : (GLY30) (ALA49) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Furze (Ulex europaeus), UEA-I [TaxId: 3902]
d2e4ma2 : (CYS152) (CYS201) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |Clostridium botulinum [TaxId: 1491]
d1n9na_ : (LEU88) (ASP122) [view usage] : d.110.3.6 |Profilin-like |PYP-like sensor domain (PAS domain) |Flavin-binding PAS domain |Putative blue light receptor, phot-lov1 domain |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2cvea1 : (SER2) (SER29) [view usage] : d.14.1.11 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |YigZ N-terminal domain-like |Hypothetical protein TTHA1053, N-terminal domain |Thermus thermophilus [TaxId: 274]
d3d5by1 : (ARG73) (ARG97) [view usage] : b.34.5.1 |SH3-like barrel |Translation proteins SH3-like domain |Ribosomal proteins L24p and L21e |Ribosomal proteins L24 (L24p) |Thermus thermophilus [TaxId: 274]
d3ebmd_ : (MET1) (SER37) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Human (Homo sapiens) [TaxId: 9606]
d3hksa2 : (VAL85) (ASP113) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1fx5a_ : (GLY30) (ALA49) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Furze (Ulex europaeus), UEA-I [TaxId: 3902]
d1y12c_ : (ASP4) (THR59) [view usage] : b.157.1.1 |Hcp1-like |Hcp1-like |Hcp1-like |Hemolysin-corregulated protein 1, Hcp1 |Pseudomonas aeruginosa [TaxId: 287]
d2akla1 : (THR60) (VAL78) [view usage] : b.34.11.2 |SH3-like barrel |Prokaryotic SH3-related domain |PhnA-like |Hypothetical protein PA0128, C-terminal domain |Pseudomonas aeruginosa [TaxId: 287]
d2cwwa1 : (LEU34) (TYR60) [view usage] : b.122.1.9 |PUA domain-like |PUA domain-like |Hypothetical RNA methyltransferase domain (HRMD) |Hypothetical protein TTHA1280, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1lvba_ : (SER200) (MSE218) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |TEV protease (nucleat inclusion protein A, NIA) |Tobacco etch virus, TEV [TaxId: 12227]
d2cffa_ : (MET1) (GLU29) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA |Thermotoga maritima [TaxId: 2336]
d2ii1a_ : (LEU79) (GLY114) [view usage] : b.23.3.0 |CUB-like |Acetamidase/Formamidase-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
d4l3wa_ : (GLY242) (SER264) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |automated matches |Rhizopus microsporus [TaxId: 4843]
d4kqob2 : (ASP314) (VAL333) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2as0a1 : (ILE38) (VAL65) [view usage] : b.122.1.9 |PUA domain-like |PUA domain-like |Hypothetical RNA methyltransferase domain (HRMD) |Hypothetical protein PH1915, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d1ilda_ : (GLY130) (ARG157) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d1iwoa1 : (LEU166) (THR191) [view usage] : b.82.7.1 |Double-stranded beta-helix |Calcium ATPase, transduction domain A |Calcium ATPase, transduction domain A |Calcium ATPase, transduction domain A |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1l8fa_ : (ALA73) (THR108) [view usage] : b.52.1.1 |Double psi beta-barrel |Barwin-like endoglucanases |Eng V-like |Endoglucanase V (Eng V) |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d2cdva_ : (ALA1) (HIS22) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Cytochrome c3 |Desulfovibrio vulgaris [TaxId: 881]
d1ckma1 : (HIS241) (GLY268) [view usage] : b.40.4.6 |OB-fold |Nucleic acid-binding proteins |DNA ligase/mRNA capping enzyme postcatalytic domain |RNA guanylyltransferase (mRNA capping enzyme) |Chlorella virus PBCV-1 [TaxId: 10506]
d1qo2a_ : (MSE1) (GLU29) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA |Thermotoga maritima [TaxId: 2336]
d3sj9a_ : (GLY148) (ARG176) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human coxsackievirus a16 [TaxId: 31704]
d3izbp_ : (PHE42) (THR83) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3izbp_ : (ILE84) (ASP121) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4l3ka1 : (SER52) (ILE71) [view usage] : b.107.1.1 |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |Urease metallochaperone UreE, N-terminal domain |automated matches |Sporosarcina pasteurii [TaxId: 1474]
d3hksb2 : (VAL85) (ASP113) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2olua2 : (HIS419) (ASN436) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 2, PBP2 |Staphylococcus aureus [TaxId: 1280]
d2pi2f_ : (VAL25) (LEU55) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mlyb_ : (ALA207) (HIS224) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d1c8ha_ : (THR42) (MET73) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Canine parvovirus [TaxId: 10788]
d1wxwa1 : (TYR35) (TYR60) [view usage] : b.122.1.9 |PUA domain-like |PUA domain-like |Hypothetical RNA methyltransferase domain (HRMD) |Hypothetical protein TTHA1280, N-terminal domain |Thermus thermophilus [TaxId: 274]
d4mqpb_ : (ALA216) (ASP233) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2a3ma_ : (ALA1) (HIS21) [view usage] : a.138.1.0 |Multiheme cytochromes |Multiheme cytochromes |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d2vepa_ : (SER2) (TYR31) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1r3fa1 : (ARG282) (ARG307) [view usage] : b.122.1.1 |PUA domain-like |PUA domain-like |PUA domain |Pseudouridine synthase II TruB, C-terminal domain |Escherichia coli [TaxId: 562]
d1defa_ : (LEU78) (ARG102) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Escherichia coli [TaxId: 562]
d4cxrb_ : (ALA216) (ASP233) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2fxta1 : (PRO363) (MET395) [view usage] : d.17.4.13 |Cystatin-like |NTF2-like |TIM44-like |Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1n91a_ : (GLY3) (LYS24) [view usage] : d.206.1.1 |YggU-like |YggU-like |YggU-like |Hypothetical protein YggU |Escherichia coli, o157 [TaxId: 562]
d3keea_ : (GLY140) (VAL170) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d1zapa_ : (ALA72) (THR93) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida albicans) [TaxId: 5476]
d4jcib_ : (LEU135) (GLY155) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d1u8yb_ : (ASP42) (ASP74) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ras-related protein RalA |Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
d3i29b_ : (THR17) (PHE79) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d1c8fa_ : (THR42) (MET73) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Feline parvovirus [TaxId: 10785]
d1h6qa_ : (MET1) (THR36) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d4efvb_ : (LYS34) (CYS58) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |automated matches |Llama (Lama glama) [TaxId: 9844]
d3ah1b1 : (VAL14) (VAL63) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Hemagglutinin component Ha1 |Clostridium botulinum [TaxId: 1491]
d4kqoa2 : (ASP314) (VAL333) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2hr9a_ : (MET1) (GLY33) [view usage] : b.88.1.2 |Mss4-like |Mss4-like |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Translationally controlled tumor protein TCTP (histamine-releasing factor) |Human (Homo sapiens) [TaxId: 9606]
d1bnda_ : (GLY34) (PHE53) [view usage] : g.17.1.3 |Cystine-knot cytokines |Cystine-knot cytokines |Neurotrophin |Brain-derived neurotrophic factor, BDNF |Human (Homo sapiens) [TaxId: 9606]
d4mqqb_ : (ALA216) (ASP233) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2a39a_ : (GLY190) (ASN216) [view usage] : b.29.1.10 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolase family 7 catalytic core |Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) |Humicola insolens, Cel7b [TaxId: 34413]
d4o98a_ : (LEU288) (VAL315) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas oleovorans [TaxId: 301]
d2bh2b1 : (ILE16) (PRO42) [view usage] : b.40.4.12 |OB-fold |Nucleic acid-binding proteins |TRAM domain |rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain |Escherichia coli [TaxId: 562]
d2xzmq_ : (GLY67) (SER111) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1cgie_ : (MET180) (GLY211) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |(alpha,gamma)-chymotrypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
d1xdoa3 : (GLY431) (THR457) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Escherichia coli [TaxId: 562]
d1nnva_ : (ASP84) (LYS106) [view usage] : d.17.7.1 |Cystatin-like |Putative dsDNA mimic |Putative dsDNA mimic |Hypothetical protein HI1450 |Haemophilus influenzae [TaxId: 727]
d1jqqa_ : (GLY37) (PRO69) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Peroxisomal membrane protein Pex13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1adqh2 : (GLN200) (LEU223) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain mu constant domain 1, CH1-mu |Human (Homo sapiens) [TaxId: 9606]
d1dt3a_ : (GLY212) (GLY240) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
d1gt6a_ : (GLY212) (GLY240) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
d3i4ia_ : (HIS177) (PRO215) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Uncultured murine [TaxId: 314099]
d1k3va_ : (THR43) (MET74) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Porcine parvovirus [TaxId: 10796]
d1bdaa_ : (ASN179) (GLY211) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Single chain tissue plasminogen activator |Human (Homo sapiens) [TaxId: 9606]
d1nkga3 : (SER127) (LYS150) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |Rhamnogalacturonase B, RhgB, N-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d3i4ib_ : (HIS177) (PRO215) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |automated matches |Uncultured murine [TaxId: 314099]
d2j6ja_ : (THR328) (TRP357) [view usage] : e.76.1.2 |Viral glycoprotein ectodomain-like |Viral glycoprotein ectodomain-like |Spike glycoprotein-like |automated matches |Vesicular stomatitis indiana virus [TaxId: 11277]
d1miqa_ : (SER65) (GLY84) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d2bq4a_ : (PRO1) (SER26) [view usage] : a.138.1.0 |Multiheme cytochromes |Multiheme cytochromes |automated matches |automated matches |Desulfovibrio africanus [TaxId: 873]
d2y88a_ : (LEU4) (GLY32) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4mqpa_ : (ALA216) (ASP233) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1c8da_ : (THR42) (MET73) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |Parvovirus (panleukopenia virus) capsid protein |Canine parvovirus [TaxId: 10788]
d3abza3 : (SER397) (LYS436) [view usage] : b.179.1.1 |Anthrax protective antigen N-terminal-like |PA14-like |PA14 |Beta-glucosidase PA14 domain |Kluyveromyces marxianus [TaxId: 4911]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, b.82, c.67, c.69, i.1, b.29, b.30, b.47, c.56, d.157, c.124, b.50, f.4, b.40, c.37, d.14, b.121, b.122, b.1,
d.110, b.42, d.17, b.179, d.21, b.52, d.167, b.34, a.138, b.43, b.88, d.136, g.17, b.23, e.76, d.206, b.157, b.107