Tableau information
Concept source: d1mjca_ amino acid (a.a.) range (LYS43)(LEU70)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS43) (GLU47) E1
(LYS50) (THR54) E2
(ASN66) (LEU70) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -125.7° E2
E3 49.1° 155.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgqx_ : (ILE132) (GLU158) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d2a5aa_ : (GLN127) (TYR161) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) |SARS coronavirus [TaxId: 227859]
d4ij5a_ : (PHE172) (LYS193) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Hydrogenobacter thermophilus [TaxId: 608538]
d2wn6a1 : (PRO160) (GLU187) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium difficile [TaxId: 1496]
d4ij6a_ : (PHE172) (LYS193) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Hydrogenobacter thermophilus [TaxId: 608538]
d1qs1a1 : (ARG202) (ASP235) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Vegetative insecticidal protein 2 (VIP2) |Bacillus cereus [TaxId: 1396]
d3n20a_ : (ILE404) (GLY429) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d2rdxg2 : (ILE317) (THR347) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
d1gph12 : (LEU206) (ARG226) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glutamine PRPP amidotransferase, N-terminal domain |Bacillus subtilis [TaxId: 1423]
d1qs2a1 : (ARG202) (ASP235) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Vegetative insecticidal protein 2 (VIP2) |Bacillus cereus [TaxId: 1396]
d3ex7e_ : (LEU76) (THR101) [view usage] : d.232.1.1 |Mago nashi protein |Mago nashi protein |Mago nashi protein |Mago nashi protein |Human (Homo sapiens) [TaxId: 9606]
d3hsqa_ : (MET1) (PRO23) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Leptospira interrogans [TaxId: 173]
d1a57a_ : (LYS7) (SER37) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4gpic_ : (LEU208) (LEU233) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mjca_ : (LYS43) (LEU70) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Major cold shock protein |Escherichia coli [TaxId: 562]
d3qbga_ : (SER92) (GLY116) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 2257]
d2c89b_ : (LEU213) (GLY245) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium botulinum [TaxId: 1491]
d2qdda2 : (LEU317) (PRO345) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
d2j3zd1 : (PRO161) (ASN188) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1aono_ : (ILE64) (SER87) [view usage] : b.35.1.1 |GroES-like |GroES-like |GroES |Chaperonin-10 (GroES) |Escherichia coli [TaxId: 562]
d1yhba_ : (GLY52) (PRO85) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene V protein |Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]
d1hrti_ : (SER19) (CYS39) [view usage] : g.3.15.2 |Knottins (small inhibitors, toxins, lectins) |Leech antihemostatic proteins |Hirudin-like |Hirudin |Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
d4h03a1 : (PRO153) (GLU180) [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |automated matches |Clostridium perfringens [TaxId: 1502]
d4ij6b_ : (PHE172) (LYS193) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Hydrogenobacter thermophilus [TaxId: 608538]
d1c8ua2 : (LEU158) (VAL173) [view usage] : d.38.1.3 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |Acyl-CoA thioesterase |Thioesterase II (TesB) |Escherichia coli [TaxId: 562]
d2vxti_ : (TYR37) (ASP68) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wi2a_ : (ARG17) (ILE45) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |PDZ domain containing protein 11, Pdzk11 |Mouse (Mus musculus) [TaxId: 10090]
d2a6za1 : (ASN30) (THR47) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |Emp47p N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jyka_ : (SER122) (VAL151) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CTP:phosphocholine cytidylytransferase LicC |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1np1a_ : (MET110) (VAL136) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 1 |Rhodnius prolixus [TaxId: 13249]
d2biba2 : (GLY274) (THR302) [view usage] : d.157.1.8 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Pce catalytic domain-like |Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1xhsa_ : (GLY26) (PRO46) [view usage] : d.269.1.1 |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Gamma-glutamyl cyclotransferase-like |Hypothetical protein YtfP |Escherichia coli [TaxId: 562]
d1x9la_ : (ARG116) (LYS143) [view usage] : b.2.10.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |DR1885-like metal-binding protein |DR1885-like metal-binding protein |Hypothetical protein DR1885 |Deinococcus radiodurans [TaxId: 1299]
d3amra_ : (GLU278) (GLN307) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |automated matches |Bacillus subtilis [TaxId: 1423]
d2iwgb1 : (VAL4) (LEU28) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |52 kDa Ro protein |Human (Homo sapiens) [TaxId: 9606]
d4go9b1 : (ASN140) (TYR163) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pseudomonas mesoacidophila [TaxId: 265293]
d2c7co1 : (ASP63) (SER87) [view usage] : b.35.1.1 |GroES-like |GroES-like |GroES |Chaperonin-10 (GroES) |Escherichia coli [TaxId: 562]
d3fyya2 : (HIS319) (PRO348) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Oceanobacillus iheyensis [TaxId: 221109]
d1mwka1 : (GLU35) (SER61) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Plasmid segregation protein ParM |Escherichia coli [TaxId: 562]
d1ybja_ : (THR37) (GLY70) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Serratia marcescens [TaxId: 615]
d1dtna1 : (HIS314) (LEU342) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Mandelate racemase |Pseudomonas putida [TaxId: 303]
d1t0bf_ : (GLU153) (ARG180) [view usage] : c.23.16.6 |Flavodoxin-like |Class I glutamine amidotransferase-like |ThuA-like |GK2113 homologue |Bacillus stearothermophilus [TaxId: 1422]
d3n1ya_ : (ILE404) (GLY429) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d3abwa_ : (SER92) (GLY116) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d1wepa_ : (PRO20) (HIS38) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |PHD finger protein 8 |Mouse (Mus musculus) [TaxId: 10090]
d1yjxk_ : (LEU208) (LEU233) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j3za1 : (PRO161) (ASN188) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d2cala_ : (ASP1029) (HIS1057) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Thiobacillus ferrooxidans [TaxId: 920]
d1iu0a_ : (GLU2) (LYS38) [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2d3pa_ : (ASP139) (THR157) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Cratylia argentea [TaxId: 83131]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.1, b.81, c.68, b.29, b.47, d.157, c.23, f.4, b.40, c.55, d.166, d.153, b.60, c.60, b.2, b.6, b.42, a.25, d.38,
f.13, d.232, b.36, g.3, d.35, g.50, b.35, d.269