Tableau information
Concept source: d1g82b_ amino acid (a.a.) range (VAL135)(PRO191)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL135) (PHE140) E1
(TYR145) (SER150) E2
(HIS186) (PRO191) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.8° E2
E3 -93.2° 106.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2xnja1 : (GLY34) (LEU67) [view usage] : b.43.4.0 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2bm2a_ : (GLY196) (THR229) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |beta-Tryptase |Human (Homo sapiens) [TaxId: 9606]
d1sgca_ : (GLY196) (GLN229) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Protease A |Streptomyces griseus, strain k1 [TaxId: 1911]
d1yp2a1 : (GLY429) (PRO446) [view usage] : b.81.1.4 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |GlmU C-terminal domain-like |Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain |Potato (Solanum tuberosum) [TaxId: 4113]
d2p39a_ : (LEU39) (HIS66) [view usage] : b.42.1.0 |beta-Trefoil |Cytokine |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ioba_ : (VAL100) (PHE150) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d3zz4a_ : (GLY148) (ALA172) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Human coxsackievirus [TaxId: 12072]
d2e4ma2 : (TYR230) (LEU285) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |Clostridium botulinum [TaxId: 1491]
d2btwb1 : (GLY164) (MSE200) [view usage] : d.3.1.14 |Cysteine proteinases |Cysteine proteinases |Phytochelatin synthase |Primitive phytochelatin synthase |Nostoc sp. PCC 7120 [TaxId: 103690]
d3eq5f_ : (LEU144) (CYS166) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k2ea_ : (LEU75) (GLY102) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein PAE3301 |Pyrobaculum aerophilum [TaxId: 13773]
d1h09a1 : (GLY263) (LYS288) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |C-terminal domain of endolysin |Bacteriophage cp-1 [TaxId: 10747]
d4w6wb_ : (VAL802) (GLY830) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2gvma_ : (ALA20) (VAL33) [view usage] : b.138.1.1 |Hydrophobin II, HfbII |Hydrophobin II, HfbII |Hydrophobin II, HfbII |automated matches |Hypocrea jecorina [TaxId: 51453]
d1v8ma_ : (ASP92) (GLU122) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase |Thermus thermophilus [TaxId: 274]
d1hf2b1 : (GLY146) (SER168) [view usage] : b.80.3.1 |Single-stranded right-handed beta-helix |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1aqta2 : (GLY67) (ARG85) [view usage] : b.93.1.1 |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Escherichia coli [TaxId: 562]
d1bg2a_ : (ASN152) (PHE172) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Human (Homo sapiens) [TaxId: 9606]
d2xw9a_ : (GLY184) (THR214) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Factor D |Human (Homo sapiens) [TaxId: 9606]
d1ynjd1 : (GLY287) (LEU313) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d1ilr2_ : (ILE101) (GLU152) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d1ynpb_ : (HIS-1) (CYS20) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Bacillus halodurans [TaxId: 272558]
d2fv5a_ : (LEU334) (GLY363) [view usage] : d.92.1.10 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |TNF-alpha converting enzyme, TACE, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2vgba1 : (GLY215) (GLN239) [view usage] : b.58.1.1 |PK beta-barrel domain-like |PK beta-barrel domain-like |Pyruvate kinase beta-barrel domain |Pyruvate kinase (PK) |Human (Homo sapiens) [TaxId: 9606]
d3zz3a_ : (GLY148) (ALA172) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Human coxsackievirus [TaxId: 12072]
d2piaa3 : (THR303) (ASP320) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Phthalate dioxygenase reductase, C-terminal domain |Pseudomonas cepacia, db01 [TaxId: 292]
d2jn9a1 : (THR49) (THR89) [view usage] : b.45.3.1 |Split barrel-like |YkvR-like |YkvR-like |Uncharacterized protein YkvR |Bacillus subtilis [TaxId: 1423]
d1zx8a1 : (LEU75) (ILE98) [view usage] : b.62.1.3 |Cyclophilin-like |Cyclophilin-like |TM1367-like |Hypothetical protein TM1367 |Thermotoga maritima [TaxId: 2336]
d1xbrb_ : (ARG99) (PRO118) [view usage] : b.2.5.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |T-box |T domain from Brachyury transcription factor |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2uydx_ : (ASN72) (GLY95) [view usage] : d.35.1.1 |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |Heme-binding protein A (HasA) |automated matches |Serratia marcescens [TaxId: 615]
d4u43b_ : (ILE24) (ASP57) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ug9a1 : (SER554) (LEU593) [view usage] : a.102.1.5 |alpha/alpha toroid |Six-hairpin glycosidases |Bacterial glucoamylase C-terminal domain-like |Glucodextranase, domain A |Arthrobacter globiformis [TaxId: 1665]
d3kruc_ : (MET6) (TYR27) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d1h4ya_ : (ALA2) (HIS23) [view usage] : c.13.2.1 |SpoIIaa-like |SpoIIaa-like |Anti-sigma factor antagonist SpoIIaa |Anti-sigma factor antagonist SpoIIaa |Bacillus sphaericus [TaxId: 1421]
d1eu3b1 : (PHE73) (TYR94) [view usage] : b.40.2.2 |OB-fold |Bacterial enterotoxins |Superantigen toxins, N-terminal domain |Streptococcal superantigen Smez-2 |Streptococcus pyogenes [TaxId: 1314]
d3krua_ : (MET6) (TYR27) [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d3qyda_ : (VAL119) (GLY152) [view usage] : b.42.4.1 |beta-Trefoil |STI-like |Kunitz (STI) inhibitors |automated matches |Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]
d1g4ma1 : (SER126) (PRO175) [view usage] : b.1.18.11 |Immunoglobulin-like beta-sandwich |E set domains |Arrestin/Vps26-like |Arrestin |Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]
d1mrxa_ : (ARG8) (GLU34) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d4howa2 : (GLU543) (LYS568) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Erwinia rhapontici [TaxId: 55212]
d2gdva2 : (LEU138) (ASP164) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Sucrose phosphorylase |Bifidobacterium adolescentis [TaxId: 1680]
d1ep1b1 : (GLN38) (TYR71) [view usage] : b.43.4.2 |Reductase/isomerase/elongation factor common domain |Riboflavin synthase domain-like |Ferredoxin reductase FAD-binding domain-like |Dihydroorotate dehydrogenase B, PyrK subunit |Lactococcus lactis, isozyme B [TaxId: 1358]
d3h3ba1 : (ALA91) (LYS128) [view usage] : c.10.2.5 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |L domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1euba_ : (LEU185) (SER210) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Collagenase-3 (MMP-13) |Human (Homo sapiens) [TaxId: 9606]
d3ivaa3 : (GLY1162) (SER1183) [view usage] : d.173.1.1 |Methionine synthase activation domain-like |Methionine synthase activation domain-like |Methionine synthase SAM-binding domain |Methionine synthase SAM-binding domain |Escherichia coli [TaxId: 562]
d1jlxa2 : (LEU245) (GLU298) [view usage] : b.42.3.1 |beta-Trefoil |Agglutinin |Agglutinin |Agglutinin |Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]
d4r6ub_ : (ILE99) (ASN155) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h79a_ : (HIS550) (ARG577) [view usage] : c.7.1.3 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |Class III anaerobic ribonucleotide reductase NRDD subunit |Class III anaerobic ribonucleotide reductase NRDD subunit |Bacteriophage T4 [TaxId: 10665]
d1md6a_ : (TYR100) (GLN152) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1F5 |Mouse (Mus musculus) [TaxId: 10090]
d1hf2a1 : (GLY146) (SER168) [view usage] : b.80.3.1 |Single-stranded right-handed beta-helix |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Cell-division inhibitor MinC, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d3ltqa_ : (VAL100) (SER152) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1beta |Human (Homo sapiens) [TaxId: 9606]
d2biba1 : (GLY477) (GLY497) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Teichoic acid phosphorylcholine esterase Pce (LytD), C-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1dqga_ : (LYS80) (VAL122) [view usage] : b.42.2.2 |beta-Trefoil |Ricin B-like lectins |Cysteine rich domain |Mannose receptor |Mouse (Mus musculus) [TaxId: 10090]
d1pd6a_ : (PRO221) (ASN249) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Cardiac myosin binding protein C, different domains |Human (Homo sapiens) [TaxId: 9606]
d1ilea2 : (GLN201) (HIS243) [view usage] : b.51.1.1 |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |ValRS/IleRS/LeuRS editing domain |Isoleucyl-tRNA synthetase (IleRS) |Thermus thermophilus [TaxId: 274]
d1lvmb_ : (ARG108) (TRP143) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |TEV protease (nucleat inclusion protein A, NIA) |Tobacco etch virus, TEV [TaxId: 12227]
d1pytd_ : (GLY896) (THR929) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |(alpha,gamma)-chymotrypsin(ogen) |Cow (Bos taurus) [TaxId: 9913]
d1irax_ : (PHE98) (ASP151) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
d1u27a1 : (ASN308) (ALA337) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Cytohesin 2 |Mouse (Mus musculus) [TaxId: 10090]
d2ch4w1 : (LYS79) (THR105) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Chemotaxis protein CheW |Thermotoga maritima [TaxId: 2336]
d1tilb_ : (SER2) (HIS24) [view usage] : c.13.2.1 |SpoIIaa-like |SpoIIaa-like |Anti-sigma factor antagonist SpoIIaa |Anti-sigma factor antagonist SpoIIaa |Bacillus stearothermophilus [TaxId: 1422]
d4ooub_ : (SER20) (ALA45) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Cryptopygus antarcticus [TaxId: 187623]
d1bioa_ : (GLY196) (THR229) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Factor D |Human (Homo sapiens) [TaxId: 9606]
d2rq9a_ : (PHE80) (PRO131) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jrka_ : (LEU75) (GLY102) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein PAE3301 |Pyrobaculum aerophilum [TaxId: 13773]
d4d9qa_ : (GLY196) (THR229) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Macaca mulatta [TaxId: 9541]
d1bsha2 : (GLY67) (GLY86) [view usage] : b.93.1.1 |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Escherichia coli [TaxId: 562]
d1sbxa_ : (GLU99) (CYS122) [view usage] : a.6.1.4 |Putative DNA-binding domain |Putative DNA-binding domain |Dachshund-homology domain |Ski oncogene |Human (Homo sapiens) [TaxId: 9606]
d3kmaa_ : (ARG5) (LYS26) [view usage] : b.85.7.2 |beta-clip |SET domain |Viral histone H3 Lysine 27 Methyltransferase |Viral histone H3 Lysine 27 Methyltransferase |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
d1irpa_ : (PHE99) (ASP152) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.1, c.10, b.81, b.47, a.102, d.92, b.50, d.144, b.40, c.37, c.7, d.3, b.2, c.13, b.85, b.1, b.45, b.42, b.62,
b.55, b.109, d.15, b.43, b.51, d.113, b.71, a.6, b.138, b.58, b.93, e.29, d.35, d.173