Tableau information
Concept source: d3urea_ amino acid (a.a.) range (PRO120)(GLY140)
nSSEs in this Concept: 3
String of secondary struct.elems. (SSEs) defining this concept: EEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO120) (GLY120) E1
(SER120) (GLY123) E2
(ALA135) (GLY140) E3
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.5° E2
E3 81.5° -113.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2rn8a_ : (HIS207) (PRO231) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1zbpa1 : (GLY154) (ILE178) [view usage] : e.61.1.1 |ImpE-like |ImpE-like |ImpE-like |Hypothetical protein VPA1032 |Vibrio parahaemolyticus [TaxId: 670]
d3ewla_ : (PHE7) (PHE31) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d4c9fd_ : (ASP293) (THR323) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1h1ha_ : (PHE76) (ASN113) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |Eosinophil cationic protein (ECP), ribonuclease 3 |Human (Homo sapiens) [TaxId: 9606]
d4f83a2 : (ASN1231) (ARG1274) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1hyra_ : (ASP188) (ARG214) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d3eura_ : (PHE11) (GLY39) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d3bx4b_ : (GLU92) (LYS122) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |automated matches |Agkistrodon rhodostoma [TaxId: 8717]
d2zqka2 : (SER161) (VAL187) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d3ff9a_ : (CYS163) (VAL187) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1e87a_ : (CYS173) (PRO197) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |CD69 |Human (Homo sapiens) [TaxId: 9606]
d3cdda2 : (ILE5) (SER25) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d1yn8a_ : (GLY35) (GLN59) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4gk1g_ : (CYS259) (LEU285) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3o3qb_ : (GLY103) (PRO136) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d1on8a_ : (PHE178) (SER210) [view usage] : c.68.1.15 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Exostosin |Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) |Mouse (Mus musculus) [TaxId: 10090]
d1dtza2 : (PHE569) (HIS595) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Camel (Camelus dromedarius) [TaxId: 9838]
d1iz2a_ : (SER330) (GLU363) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
d3puia2 : (ASP355) (LEU392) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Rhodococcus sp. [TaxId: 104109]
d2dd8s1 : (THR433) (ASN505) [view usage] : d.318.1.1 |SARS receptor-binding domain-like |SARS receptor-binding domain-like |SARS receptor-binding domain-like |Spike protein S1 |SARS coronavirus [TaxId: 227859]
d1gl5a_ : (TRP216) (LYS236) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |tyrosine kinase tec |Mouse (Mus musculus) [TaxId: 10090]
d1egib_ : (CYS735) (GLN762) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Macrophage mannose receptor, CRD4 |Human (Homo sapiens) [TaxId: 9606]
d4gk1d_ : (CYS259) (LEU285) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i2ga2 : (ASP355) (LEU392) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Rhodococcus sp. [TaxId: 104109]
d3cada_ : (CYS232) (ARG256) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3alua_ : (ASN119) (LEU149) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Cucumaria echinata [TaxId: 40245]
d3t3aa_ : (ASN186) (GLU213) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1kcgb_ : (ASP188) (ARG214) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d1igub_ : (ALA332) (ALA354) [view usage] : b.34.1.3 |SH3-like barrel |C-terminal domain of transcriptional repressors |Transcriptional repressor protein KorB |Transcriptional repressor protein KorB |Escherichia coli [TaxId: 562]
d1mpua_ : (ASP188) (ARG214) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d2h6sa_ : (ASP97) (SER116) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d3cckb_ : (CYS173) (PRO197) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zcza2 : (LYS163) (HIS191) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Thermotoga maritima [TaxId: 2336]
d1igqd_ : (ALA332) (ALA354) [view usage] : b.34.1.3 |SH3-like barrel |C-terminal domain of transcriptional repressors |Transcriptional repressor protein KorB |Transcriptional repressor protein KorB |Escherichia coli [TaxId: 562]
d2c6ua_ : (ASN194) (LYS219) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p1zd_ : (CYS235) (LYS259) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell receptor |Mouse (Mus musculus), ly49-c [TaxId: 10090]
d3cdde2 : (ILE5) (SER25) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d3cddb2 : (ILE5) (SER25) [view usage] : b.106.1.1 |Phage tail proteins |Phage tail proteins |Baseplate protein-like |Baseplate protein gpP |Shewanella oneidensis [TaxId: 70863]
d2dila_ : (THR45) (GLY65) [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3o3qc_ : (GLY103) (PRO136) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d1i5ia2 : (PHE88) (SER123) [view usage] : b.11.1.1 |gamma-Crystallin-like |gamma-Crystallin-like |Crystallins/Ca-binding development proteins |gamma-Crystallin |Cow (Bos taurus), isoform II (B) [TaxId: 9913]
d3m9za_ : (ASN186) (GLU213) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1zbob_ : (PRO5) (PHE24) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |automated matches |Bordetella parapertussis [TaxId: 257311]
d2frya_ : (GLU38) (SER61) [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ib8a1 : (ASP131) (LEU162) [view usage] : b.38.2.1 |Sm-like fold |YhbC-like, C-terminal domain |YhbC-like, C-terminal domain |Hypothetical protein SP14.3 (SP0552) |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ju3a1 : (ASP355) (LEU392) [view usage] : b.18.1.13 |Galactose-binding domain-like |Galactose-binding domain-like |PepX C-terminal domain-like |Bacterial cocaine esterase, C-terminal domain |Rhodococcus sp. mb1 [TaxId: 51612]
d4gk1c_ : (ASP258) (LEU285) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kcga_ : (ASP188) (THR215) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d1cx1a_ : (VAL80) (PRO121) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Cellulose-binding domain of cellulase C |Cellulomonas fimi [TaxId: 1708]
d1c47a4 : (ASN472) (ALA494) [view usage] : d.129.2.1 |TBP-like |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1al0g_ : (PHE14) (ASP45) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage phi-X174 [TaxId: 10847]
d1hn0a4 : (GLN842) (ILE862) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitin ABC lyase I |Proteus vulgaris [TaxId: 585]
d2ea3a_ : (ALA70) (GLY98) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Cellulomonas bogoriensis [TaxId: 301388]
d2x6aa2 : (GLU173) (LEU210) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d3ewlb_ : (PHE7) (PHE31) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d1eggb_ : (CYS735) (GLN762) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Macrophage mannose receptor, CRD4 |Human (Homo sapiens) [TaxId: 9606]
d1sg1x1 : (GLY22) (VAL48) [view usage] : g.24.1.1 |TNF receptor-like |TNF receptor-like |TNF receptor-like |Low affinity neurotrophin receptor p75NTR |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1xara_ : (ASP367) (PRO392) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |DC-SIGNR (DC-SIGN related receptor) |Human (Homo sapiens) [TaxId: 9606]
d1u27a1 : (ALA337) (ALA358) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Cytohesin 2 |Mouse (Mus musculus) [TaxId: 10090]
d2bpdb_ : (CYS219) (GLU243) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2erma_ : (ASN120) (PRO150) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d1hyrb_ : (ASP188) (ARG214) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |NK cell-activating receptor nkg2d |Human (Homo sapiens) [TaxId: 9606]
d3o3qa_ : (GLY103) (PRO136) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d4ezml_ : (CYS259) (PRO291) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Low affinity immunoglobulin epsilon Fc receptor |Human (Homo sapiens) [TaxId: 9606]
d2bjra2 : (LYS250) (GLU274) [view usage] : b.169.1.1 |MFPT repeat-like |MFPT repeat-like |MFPT repeat |Sperm motility protein MFP2 |Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, c.68, b.30, b.47, b.50, d.129, c.47, b.18, d.169, b.121, b.122, b.1, c.97, b.42, b.55, e.1, b.34, d.5, b.11, b.38,
d.318, b.106, b.169, g.24, e.61